Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_C04
(875 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.52
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.6
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 2.1
05_03_0179 - 9257066-9258946 30 2.1
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.7
07_03_1400 + 26287124-26287298,26287925-26288007,26288141-262882... 29 6.5
08_01_0508 + 4424607-4424800,4425067-4425111,4425587-4425677,442... 28 8.5
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 8.5
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 8.5
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.3 bits (70), Expect = 0.52
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 310 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 146
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +3
Query: 363 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 515
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 208 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 324
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>05_03_0179 - 9257066-9258946
Length = 626
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 416 RRSRY*IHGRGERSPGRWLQPRLAVPRQASTSVPRTPAKCCSPIP 282
+++R HGR G L+ + A P +VP TP KC +P+P
Sbjct: 120 KKARGATHGRNIYDGGCLLEAQHAQPCSKDGAVP-TPTKCSTPVP 163
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 223 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 134
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>07_03_1400 +
26287124-26287298,26287925-26288007,26288141-26288270,
26288369-26288442,26288797-26288883,26288976-26289100,
26289232-26289292,26289606-26289683,26289785-26289890,
26289978-26290123,26290264-26290380
Length = 393
Score = 28.7 bits (61), Expect = 6.5
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +2
Query: 449 ISMQLDNWXNDMQTCTFKFGSRMHNSDEMD 538
++++ W ND+++C F+ SR +S+ M+
Sbjct: 83 VNLEGGGWCNDVKSCVFRKSSRRGSSNHME 112
>08_01_0508 +
4424607-4424800,4425067-4425111,4425587-4425677,
4425791-4425850,4427031-4427150,4427332-4427583
Length = 253
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 236 DLQMNWIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLNAAATTARDYALRARVSN 403
++Q+N + K L +W S + VS + PD +LL A R Y + V+N
Sbjct: 143 NMQLNQVPKMLFILRKQWAPSAFCVSFKLETDPD-ILLQKAEAALRKYGMNVVVAN 197
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 95 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 250
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -2
Query: 337 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 170
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,799,258
Number of Sequences: 37544
Number of extensions: 545360
Number of successful extensions: 1433
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1432
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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