Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_C02
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    27   3.5  
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    26   6.1  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   6.1  
SPCC338.04 |cid2||caffeine induced death protein Cid2|Schizosacc...    26   8.1  

>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 475 PPQFLTNLIRFGGGSCH*PW*RVEPPETPHNEVRDG 368
           PP F+T++ + G  S H     V      HNEV DG
Sbjct: 237 PPNFVTSINKAGSSSDHGGELHVTYCPVDHNEVSDG 272


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
 Frame = +3

Query: 396 SGGSTRHHGQWQEP----PPNLIRFVRNCGGPGNSSAGSAVVTRIRRLGLEVALDKTQAL 563
           S   +R  GQ  EP    PP  I+   +  G GN SA    ++        VAL+ T  +
Sbjct: 68  SEAKSREFGQRSEPSPPPPPEGIKIKISTKGAGNPSAKKLKISTEETSDTNVALNNTSEI 127

Query: 564 LFHGPGRAPPLGA 602
                  + P  A
Sbjct: 128 SHKSSNNSQPKDA 140


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 491 RRFSRRHKDPTAGTRGGARQNPGPVVSRAGTSAASGCPPRD 613
           R+ S R  DP+  T   ARQ+P   VSR   S+++    RD
Sbjct: 78  RKVSSR-TDPSTSTISNARQHPRNSVSRLSRSSSNVRQQRD 117


>SPCC338.04 |cid2||caffeine induced death protein
           Cid2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 167

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 41  VFERWRYLGVDFEASGCVTLEHSISSALNNISRAPLKPQQRL 166
           +FE W  L  D     C T+  S      N S++PLK QQ+L
Sbjct: 60  LFEGW--LSRDQFLKECQTIVRSQLDQDRNTSKSPLKSQQQL 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,702,504
Number of Sequences: 5004
Number of extensions: 79950
Number of successful extensions: 237
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)