Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_B23
(854 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 30 0.36
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 29 0.64
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 29 0.64
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 29 1.1
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 27 2.6
SPBC12D12.02c |cdm1||DNA polymerase delta subunit Cdm1|Schizosac... 27 3.4
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 27 3.4
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 27 4.5
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 26 7.8
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 30.3 bits (65), Expect = 0.36
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +1
Query: 181 FNKIMSTLKLTSEVRSGLYSHWRDVFEHVRSTAKKKHYADQNTSSGTPQEREC-SIRKSC 357
F+K++ST+ ++E+ + L WRD +HV + + +S C
Sbjct: 384 FSKMLSTI--SNEI-TNLQGDWRDQLDHVEFLQEHLGPLEVELASVKVLYDNCFQAGIEE 440
Query: 358 NNVSVTSMEDLSHEEIVTSYVLAHVAQF 441
N+ ++ S EDL HE +T+ ++A+ ++
Sbjct: 441 NDYTMFSYEDLEHEFGITANIIANKIKY 468
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 29.5 bits (63), Expect = 0.64
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 256 FEHVRSTAKKKHYADQNTSSGTPQERECSIRKSCNNVSVTSMEDLSHEEI 405
F+ + K+K Y Q SG + SIRK+C N+ + L H +
Sbjct: 1709 FDFNGNNKKQKEYVTQLILSGLLNKNTNSIRKTCMNILLYLRRQLGHHAL 1758
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 29.5 bits (63), Expect = 0.64
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = -1
Query: 752 LFACLLEPEVIERVVLLVLNRVDSKISATIHSLMSWFTVLVPYNSSSSHWLKNDSCRNYP 573
+ AC L+P++ + L+ N + I+A H L T+L + +S DS NY
Sbjct: 505 VLACRLDPKIDNTISALLENGNNKVINANCHLLRELVTLLPASTAYTSSPYGGDSFYNYV 564
Query: 572 L 570
L
Sbjct: 565 L 565
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 28.7 bits (61), Expect = 1.1
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -3
Query: 849 PASPXTTHRTFXLQVTTTSDGSIXFPTELACFLVCLLAGA--RSHR 718
P P TT + V +SDGS L F+V LAG+ R HR
Sbjct: 49 PPPPGTTTVVYQKDVPRSSDGSRSMTAGLGGFMVGALAGSVLRGHR 94
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 27.5 bits (58), Expect = 2.6
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = -1
Query: 749 FACLLE-PEVIERVVLLVLN---RVDSKISATIHSLMSWFTVLVPYNSSSSHW 603
F C LE PEV+ L ++ R D +SA + W T L+ SS SH+
Sbjct: 602 FNCFLELPEVLHGKKFLKVDEATREDMLMSAETPDDILWITTLISTGSSMSHF 654
>SPBC12D12.02c |cdm1||DNA polymerase delta subunit
Cdm1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 205 KLTSEVRSGLYSHWRDVFEH-VRSTAKKKHYADQNTSSGTP 324
+ T +SG ++ RDVF H VRS + + H + +S +P
Sbjct: 4 RTTQAKKSGQNTNIRDVFPHVVRSNSSQSHIGKKVSSEQSP 44
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 247 RDVFEHVRSTAKKKHYADQNTSSGTPQEREC 339
R+VFE A KH SSGT +++ C
Sbjct: 169 REVFESATRAAMLKHKPKVKPSSGTKKKKRC 199
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 358 NNVSVTSMEDLSHEEIVTSYVLAHVAQFDCRRHHMAFTNGNT 483
+N+SVT+ L + +V++Y L CR AFTNG T
Sbjct: 853 SNISVTNENRLQYIHLVSNYYLNARLSRQCR----AFTNGFT 890
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.8 bits (54), Expect = 7.8
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +2
Query: 404 SSHLTFWLMLPSLTVDVITWRLLTEIQHVTSYCKKLRNLK*NFDRIIDRIMDLS 565
S LTF +P T +V+T +T V S K L N NF+ + R D+S
Sbjct: 193 SGKLTFKANIPVPTSEVVTENNVTRNVTVYSNQKHLGNESENFNDMEGRAEDIS 246
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,297,264
Number of Sequences: 5004
Number of extensions: 65012
Number of successful extensions: 171
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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