Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_B22
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   2.0  
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    27   2.6  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    27   3.5  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    27   4.6  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   4.6  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   8.0  

>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 30/112 (26%), Positives = 42/112 (37%), Gaps = 3/112 (2%)
 Frame = -2

Query: 360 SYRRRMPPLRRQDEQTLGSFSPGPRPTCHPRNTQRLGPGEGRAG--RSSEPSRNRY-STG 190
           S++   P   +    T GS S  P    HP       P        R+ + S+  Y S  
Sbjct: 359 SFQEEFPSTSKSPSATPGS-SNAPVVDMHPSADSATYPTSIYPSNVRARDDSQQAYISAN 417

Query: 189 EGQGPTPCGTPRSTGKRSTAPPCPVHTTDLSSR*DPISRRRYAGTP*YSSAP 34
              G  P  T    G    AP   ++TT L +   PI+ + Y+  P Y S P
Sbjct: 418 MTTGEMPSMTNVPAGNAPAAPGT-MYTTPLPTANSPIAYQSYSVMPTYWSFP 468


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +3

Query: 471 VEVGVTGLRYLGLELDGRWNFRAHFEKLGPRL-MATAGSLSRLLPNVGGPDTV 626
           V+  + G  Y   + +   N++AHF   GP +    AG L   +   G   T+
Sbjct: 181 VDESIPGKGYFANQFENPANWQAHFNSTGPEIWRQCAGKLDAFIAGSGTGGTI 233


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 394 FSRATSRPSLRILPTTNATPAQARRAD 314
           FS+ T +P   + PTT  TP  A + D
Sbjct: 583 FSKTTIKPETPLTPTTTPTPRTAAQED 609


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +1

Query: 349  SSVRSEGWASTWPSRNPRPCCFTGLGESRHPG 444
            +   +E W  ++   NP+  C+    + +HPG
Sbjct: 1277 TQAETEKWLESYSEANPKRSCYAFCFDHQHPG 1308


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1060

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 670  YGAPVWCRALTRXNVVALRRPQRAIAVRAIRG 765
            YG    C+ LT  N+ A  R Q   AVR + G
Sbjct: 1011 YGPSFICKLLTHENISASHRQQLQSAVRNVLG 1042


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 421 AL*NSRAWDFSRATSRPSLRILPTTNATPAQARRADSW*FL 299
           A+ ++RAW +       S    PT + +PAQ    DSW +L
Sbjct: 518 AMNSARAW-YIHGCYNGSATSYPTVDLSPAQRGCQDSWNYL 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,623,423
Number of Sequences: 5004
Number of extensions: 79069
Number of successful extensions: 255
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)