Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_B19
         (838 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   4.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   4.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   4.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   4.6  
X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.       22   6.1  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 517 FTDCFRCFLRFYWI 476
           F  CF CF   YWI
Sbjct: 412 FPVCFVCFNLMYWI 425


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 517 FTDCFRCFLRFYWI 476
           F  CF CF   YWI
Sbjct: 412 FPVCFVCFNLMYWI 425


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 517 FTDCFRCFLRFYWI 476
           F  CF CF   YWI
Sbjct: 350 FPVCFVCFNLMYWI 363


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 735 GSKIGGTGLLG*SIVTAVAGSTILIMTCARS 643
           G    G G++G +I + VAG+  L +  A +
Sbjct: 7   GGSSAGVGVVGGTIASVVAGAASLTLVKAET 37


>X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.
          Length = 70

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 470 YGDPVEPEKAPEAISKAVATLPPE 541
           Y  P EPE APE  ++A A   PE
Sbjct: 20  YAAP-EPEPAPEPEAEADAEADPE 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,086
Number of Sequences: 438
Number of extensions: 4733
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)