Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_B17
(853 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 31 0.27
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 30 0.48
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 28 1.5
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.6
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 3.4
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 26 5.9
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 5.9
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 26 7.8
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 26 7.8
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 30.7 bits (66), Expect = 0.27
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +3
Query: 66 TRSRPRHVTAGVPQGSALSPLLFSLYINDI 155
T +R ++ G PQGS +SP+L ++Y++ +
Sbjct: 410 TENRYKYDIVGTPQGSIVSPILANIYLHQL 439
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 29.9 bits (64), Expect = 0.48
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +1
Query: 43 RSDIESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIW-RSSPMTPPSTTRV 219
++D+ RVP P S + K+PPS I + P L+ P RSS +P T
Sbjct: 184 KTDLGKPARVPSPKKSLSSTIKSPPSRVKLPTSILSKSPPLKVPNKNRSSTFSPLRTPTS 243
Query: 220 GRRRCFIDDFRPQLPP 267
+ I D PP
Sbjct: 244 SSKTFVIVDHSTPSPP 259
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 279 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNN 395
F+ W+ P+ S +L ++G PP + LS L ++ N
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSELVAAKLKN 298
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 448 PRRSNI*ASPSTVG*HSAPTSRRYAIVPPSS*DVSTR 558
P SN + ST H P+S+R +++PP++ ++ +R
Sbjct: 314 PSGSNQASLRSTSTIHYTPSSKRISVIPPNTSNIGSR 350
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 27.1 bits (57), Expect = 3.4
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 52 IESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPS 207
+ +++R P+ P R PP R + I I PGL SS TP S
Sbjct: 413 LNNQQRESAPLL--PRKRGRPPKKRQENAEIRNITPGLTDSSVHSSSATPQS 462
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 509 DVGAECHPTVEGDA*IFDLRGPRYGLVVHRDWANG 405
DV A C +++ +DLR PR+ + DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 5.9
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Frame = +3
Query: 156 PRSPETHLALFADDTAIYYSCRKKALLHRRL---QTAATTMGQWFRKWRIDINPTKSTAV 326
P++ + +LF+D++ + S +L ++ + F++ + ST +
Sbjct: 326 PQTQQNESSLFSDNSMVNSSSNSFSLFPNATLPNPPSSELLTTPFQQIKPPSQVFMSTGL 385
Query: 327 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRP 416
L K+ RP PLP + P+ VRP
Sbjct: 386 LSKQHRPRKNINFTPLPPSTPSKPSTFVRP 415
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 96 GVPQGSALSPLLFSLYINDI 155
G+PQGS LS L Y+ D+
Sbjct: 703 GIPQGSILSSFLCHFYMEDL 722
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 25.8 bits (54), Expect = 7.8
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +3
Query: 327 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMYDQPIP---WAPKVKYLGVTLDSRMTF 497
L ++ RP +L+ V+ AP++R ++ P W PK K G R
Sbjct: 408 LLEKLRPEMISLNADF-IGNVDRAAPSLRKAEAEEEKPPEEKWVPKAKARGKNSALRRYL 466
Query: 498 RPHIKTVRDR 527
R H + V D+
Sbjct: 467 RKHARNVVDQ 476
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,677,740
Number of Sequences: 5004
Number of extensions: 82108
Number of successful extensions: 273
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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