Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_B13
(856 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.16
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.21
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 30 0.36
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch... 28 1.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.6
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 27 2.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 4.5
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace... 26 5.9
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.5 bits (68), Expect = 0.16
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = -3
Query: 728 PXGGPPPPXXGPXPPPPGXKXSPXPPRXXXXKK 630
P G PPPP P PP P PP +K
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37
Score = 29.1 bits (62), Expect = 0.84
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 731 PPXGGPPPPXXGPXPPPPG 675
PP G PP P PPPPG
Sbjct: 13 PPPPGFEPPSQPPPPPPPG 31
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.1 bits (67), Expect = 0.21
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = -3
Query: 731 PPXGGPPPPXXGPXPPPPGXKXSPXPP 651
P GGPPPP PPPPG + PP
Sbjct: 756 PIMGGPPPP-----PPPPGVAGAGPPP 777
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -3
Query: 731 PPXGGPPPPXXGPXPPPPGXKXSPXPP 651
PP PPP G PPPP P PP
Sbjct: 761 PPPPPPPPGVAGAGPPPP----PPPPP 783
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 30.3 bits (65), Expect = 0.36
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = -1
Query: 181 WSRGXTPXSYVARSESIMRDSDVAFSHSAALAIAQVRRNG*QNNISRRHFMTTDL 17
WS G TP + +ESI+ + +L ++ R + +N S H + T +
Sbjct: 242 WSHGLTPEVFWQNTESILTCPEEQLEQKISLLLSSTRNSPTMSNSSLTHLLPTPI 296
>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 522
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +3
Query: 33 KCR-RLILFCYPFLLTCAIASAAECENATSLSLMIDSLLATYDXGVSPRLQN 185
KCR +FC FL + + A C N SL L + L ++ ++P N
Sbjct: 138 KCRLSYFIFCNVFLWSAMVCLMAACRNGPSL-LGLRFLAGIFEASITPAFIN 188
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = -3
Query: 728 PXGGPPPPXXGPXPPPPGXKXSPXP 654
P PP P PPPP P P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPP 1718
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 731 PPXGGPPPPXXGPXPPPPGXKXSPXPP 651
PP PPP P P P G +P PP
Sbjct: 1709 PPPMSVPPPPSAP-PMPAGPPSAPPPP 1734
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 731 PPXGGPPPPXXGPXPPPPGXKXSPXP 654
PP PP P P PPP S P
Sbjct: 1716 PPPSAPPMPAGPPSAPPPPLPASSAP 1741
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Frame = -3
Query: 722 GGPPPPXXGPXPP-PPGXKXSPXPPR 648
G PP GP PP P K SP PR
Sbjct: 418 GAPPSHTYGPPPPVQPKPKISPTTPR 443
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = -3
Query: 791 PPXXXXXGGGXXXXKXXLXXPPXGGPPPPXXGPXPPPPGXKXSPXPP 651
PP G K PP PPP P P P P PP
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPV---PPPSEAPPVPKPSVGVPPVPP 1212
>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
N-acetylglucosaminyltransferase Alg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 154 YVARSESIMRDSDVAFSHSAALAIAQVRRNG 62
Y ES + D+ + SH+ A +I Q R+G
Sbjct: 63 YAPEIESYIHDASIVISHAGAGSILQTLRSG 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,078,547
Number of Sequences: 5004
Number of extensions: 27897
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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