Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_B12
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    28   1.5  
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    27   2.7  

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 524 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIQMFSTHRDCESTXY 658
           Y+C  +  +S G L  SED ++ W    K GLI+ F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
 Frame = -2

Query: 811 NAWRIXFPMIGRXDIEGSKSNVXMNAWLPQA-SIPVVTFXAPLXKTLYTKGSIXRAFAVP 635
           N   + FP IGR  +   KS+  MN   P    IP V     + +   T G + + F VP
Sbjct: 196 NVDNVQFPYIGRFRLRSQKSDKVMNKGYPFGYRIPSVGQLQLILR--QTNGLVIKVFLVP 253

Query: 634 MRTEHLDQAS 605
                +   S
Sbjct: 254 YNVSSMVDCS 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,385,226
Number of Sequences: 5004
Number of extensions: 69161
Number of successful extensions: 164
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)