Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_B11
         (847 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    66   3e-13
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.7  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   2.7  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.5  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   4.7  
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    22   8.2  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 66.5 bits (155), Expect = 3e-13
 Identities = 42/167 (25%), Positives = 66/167 (39%), Gaps = 2/167 (1%)
 Frame = +1

Query: 118 MGCGTSFVKYXXXXXXXXXXXXXXXXXXXXXXXXMNWTMVKDLLKTHLAVGPWIFIVVGA 297
           M CG   +KY                        +    V   ++T LA      IV+G+
Sbjct: 1   MSCGMGMIKYLLFIFNFVFAVCGLGILTLGVLIHLQILGVSKQIETGLAFPSITLIVLGS 60

Query: 298 VMFVIAFLGCCGAIRESHCMVVTYAXXXXXXXXXXXXXXXXXF--TYGESIKESIMDGVG 471
           ++FVI+F GCCGAIRESHCM +T+A                 F     +    +I +   
Sbjct: 61  IIFVISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQ 120

Query: 472 VLFKXRSDANADEAAEAVFSELQRQFECCGNTGAINYGQFTLPESCC 612
            +F   +    +  ++     +Q+  +CCG     +Y    +P SCC
Sbjct: 121 EIF---NGYFLNSESKDFIDFIQKNLQCCGVHSLSDYNDKPIPASCC 164



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 746 VACVEVVXTLFALCLAN 796
           +A VE++  + ALCLAN
Sbjct: 204 IAIVELIGIICALCLAN 220


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 445 KESIMDGVGVLFKXRSDANADEAAEAVFSELQR 543
           K S+M   G+  +     + DE    VFS LQR
Sbjct: 96  KRSLMGAQGLSIRGLQINHEDETIRPVFSTLQR 128


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 592 TLPESCCVKKSILSTFAGNNCTVDAANPGCGPKIGEL 702
           T  ESC V   I + + G N  +  A    G KI EL
Sbjct: 252 TFFESCGVADLIATCYGGRNRKICEAFVKTGKKISEL 288


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 716 FHFW*SSPILGPQP-GFAASTVQLLPAK 636
           F FW S  ++GP+P  F  +T  L+  K
Sbjct: 26  FDFWKSRGVVGPKPVPFFGTTKDLILVK 53


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 436 ESIKESIMDGVGVLFKXRSDANADEAAEAVFSELQRQ 546
           ++I   I + +    + + D   DE+ EA+F  + RQ
Sbjct: 276 DAIYNIISEIIETTIQEKRDDAKDESVEAIFQSILRQ 312


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 768 EPCSXCASPIXXKH 809
           EPC  CA+P   K+
Sbjct: 18  EPCDGCAAPYGYKN 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,415
Number of Sequences: 438
Number of extensions: 3866
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)