Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_B02
         (879 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0874 + 12017069-12018051,12018137-12018316,12018421-120186...    31   0.92 
01_05_0591 + 23481400-23481479,23481518-23482538,23482574-23482996     31   0.92 
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031...    30   2.8  
04_04_0577 + 26349205-26349669,26350384-26350482,26350887-263510...    30   2.8  
08_02_0094 + 12277756-12278574,12280314-12280418,12280487-122805...    29   6.5  
05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311...    29   6.5  
07_03_0138 - 14140653-14140988                                         28   8.6  
03_05_0923 + 28848925-28849272,28849636-28849869,28849965-288501...    28   8.6  
03_02_0875 + 12038365-12039329,12039417-12039593,12039651-120398...    28   8.6  

>03_02_0874 +
           12017069-12018051,12018137-12018316,12018421-12018600,
           12018718-12018797,12018999-12019259,12019360-12019474,
           12019631-12019855,12020840-12020849
          Length = 677

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +1

Query: 235 MGSSPINFHGSISLMRMAPKPSAL*HPNMTRNMTRLYFRPPLPKDSVSD--LPSFLTDFL 408
           MG   I  HG   ++R+A  P AL H  M +    L   PP P  S S   +P+  + FL
Sbjct: 26  MGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKELALLPPPPPPSSSSPTVPAAHSPFL 85

Query: 409 L 411
           L
Sbjct: 86  L 86


>01_05_0591 + 23481400-23481479,23481518-23482538,23482574-23482996
          Length = 507

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +3

Query: 552 TQAVIQANANRSDXDWRYTAVRIFSKLSIKSTKXQFSALGKHADIXLMHD 701
           T+AV     N  D DWR   ++  +K  +   K +   + + + + +MH+
Sbjct: 255 TEAVDTQEVNMIDADWREPFIKFLTKQELPQDKDEAERISRRSKLYVMHE 304


>08_02_1480 +
           27401923-27402158,27402847-27402982,27403119-27403168,
           27403810-27403813,27404394-27404494,27405084-27406305
          Length = 582

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 155 LSRLRLQNCGSSNDGTPGPRLP*NPPQWGVLQSISMGRS 271
           +  LR  +  SS+  +  PR P +PP W  L+S+ +  S
Sbjct: 1   MKALRRSSTSSSSSASSSPRAPSSPPPWVQLRSLLVASS 39


>04_04_0577 +
           26349205-26349669,26350384-26350482,26350887-26351064,
           26351900-26352087,26352335-26352373
          Length = 322

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 432 FLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANR 584
           F    + R Y R+  ++ PF PD+ V+ I+L + S L +   A I    +R
Sbjct: 191 FDMDDVVRKYIRYTLNEKPFNPDVVVDLIHLRKASMLEDAEVAEILNEISR 241


>08_02_0094 +
           12277756-12278574,12280314-12280418,12280487-12280543,
           12280969-12281041,12281525-12281703,12281788-12281961,
           12282041-12282326,12282433-12282509,12282599-12282668,
           12282751-12282822,12282920-12283155,12283240-12283374,
           12283466-12283761,12284237-12284408,12284510-12284608,
           12284704-12284835,12284950-12285050,12285426-12285615,
           12285723-12285761
          Length = 1103

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = +3

Query: 6   VDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTKVDISSVEPTDTSIEPVYPGCDYKTVA 185
           VD +SS+   LD   L   R+ +  +I   L    D  + + T   I+P +P C Y    
Sbjct: 287 VDSESSSDSELDDLILRMHRKEVVHEIKRHLKKSYDFHTSKCT-LIIKPKFPTCIYNFYI 345

Query: 186 ALMME 200
           ALM E
Sbjct: 346 ALMFE 350


>05_03_0645 +
           16529635-16529794,16530188-16530312,16531100-16531173,
           16531961-16532006,16532638-16532730,16534429-16535886
          Length = 651

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
 Frame = +1

Query: 205 GTPTPLKS----ATMGSSPINFHGSISLMRMAPKPSAL*HPNMTRNMTRLYFRPPLPKD- 369
           G P  L S    A  G++ +    + S   MAP PSA   P + R +  L   PP P   
Sbjct: 311 GPPVALSSSAQGAVQGTAGLMASSATSAAAMAPPPSAPSLPEVERVILELLSLPPSPLQP 370

Query: 370 --SVSDLPSFLTDFLLLTKSL---AHFCFHLY 450
             S S    F+ + LLL   L      C H++
Sbjct: 371 AMSGSTATCFICNKLLLPTDLHLVLPVCSHMF 402


>07_03_0138 - 14140653-14140988
          Length = 111

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -1

Query: 363 WQWRPKVKSGHISSHVWVL*R*GFGRHSHKGDRPMEIDWRTPHCGGFQGSRGPG 202
           W+WR       +S+   V  + G G+   +G+R     WR    GG +G  G G
Sbjct: 21  WRWRWMAAVERVSAAAVV--QAGVGKVGREGERQRGRQWRGRGSGGEEGVEGGG 72


>03_05_0923 +
           28848925-28849272,28849636-28849869,28849965-28850131,
           28850433-28850651,28850743-28850929,28851012-28851063,
           28851158-28851387,28851619-28851717,28851835-28852565,
           28853004-28853519,28854140-28854398
          Length = 1013

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 402 VCKEGRKVGNGVFWQWRPKVKSGHISSHVWVL 307
           V  EG + G G  W WR KVK   ++   WVL
Sbjct: 18  VAVEGDEAGKGRRW-WRVKVKLSTVAVVAWVL 48


>03_02_0875 +
           12038365-12039329,12039417-12039593,12039651-12039893,
           12040045-12040124,12040242-12040508,12040599-12040710,
           12040757-12041071,12041357-12041366
          Length = 722

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +1

Query: 235 MGSSPINFHGSISLMRMAPKPSAL*HPNMTRNMTRLYFRPPLPKDSVS-DLPSFLTDFLL 411
           MG   I  HG   ++R+A  P AL H  M +    L   PP    S S  +P+  + FLL
Sbjct: 26  MGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKELALLPPPQAASSSPTVPAAHSPFLL 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,233,856
Number of Sequences: 37544
Number of extensions: 589828
Number of successful extensions: 1504
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1504
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)