Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_B01
(841 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 281 7e-77
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 158 8e-40
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 114 2e-26
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 105 1e-23
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 102 7e-23
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 93 3e-20
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 92 8e-20
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 86 7e-18
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 85 2e-17
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 84 2e-17
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 81 2e-16
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 81 3e-16
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 80 4e-16
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 80 4e-16
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 78 2e-15
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 77 3e-15
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 72 1e-13
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 72 1e-13
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 71 3e-13
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 63 4e-11
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 63 5e-11
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 56 6e-09
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 49 9e-07
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 39 0.001
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 37 0.004
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 34 0.022
SPAC513.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 5.8
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 26 7.6
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 281 bits (690), Expect = 7e-77
Identities = 132/213 (61%), Positives = 165/213 (77%), Gaps = 1/213 (0%)
Frame = +3
Query: 33 KLDFEEEVKQIIKLLP-KRRQTMLFSATQTKKTEALTSLALKHEPVYVGVDDHREQATVD 209
++ FE+E++QI+K+LP + RQT+LFSATQT K E L ++LK P+YV VD + +TV+
Sbjct: 250 EIGFEDEMRQIMKILPSENRQTLLFSATQTTKVEDLARISLKPGPLYVNVDSGKPTSTVE 309
Query: 210 SLEQGYIVCPSEKRMMVLFTFLKKNRKKKVMVFFSTCMSVKYHHELFNYIDLPVMSIHGX 389
LEQGY+V S+KR ++LF+FLK+N KKKV+VF S+C SVKY EL NYIDLPV+ +HG
Sbjct: 310 GLEQGYVVVDSDKRFLLLFSFLKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGK 369
Query: 390 XXXXXXXXXXXXXCNAESGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTAR 569
CNAE GILLCT+VAARGLDIPAVDWIVQYDPPDDP++YIHRVGRTAR
Sbjct: 370 QKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTAR 429
Query: 570 GLGTSGHALLFLRPEELGFLRYLKQSKVTLNEF 668
G +G +L+FL P ELGFLRYLK +KV+LNEF
Sbjct: 430 GTKGTGKSLMFLAPSELGFLRYLKTAKVSLNEF 462
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +2
Query: 695 ISTTAKKLISRNYFLNQSA 751
+ + +KL+S+NY+L QSA
Sbjct: 472 VQSQLEKLVSKNYYLQQSA 490
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 158 bits (384), Expect = 8e-40
Identities = 84/230 (36%), Positives = 129/230 (56%), Gaps = 2/230 (0%)
Frame = +3
Query: 36 LDFEEEVKQIIKLLPKRRQTMLFSATQTKKTEALTSLALKHEPVYVGVDDHREQATVDSL 215
+ F + I+ LP RQTMLFSATQTK + L L+L++ P ++ V ++ +T +L
Sbjct: 200 MGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLARLSLQN-PDFISVHENDTSSTPSNL 258
Query: 216 EQGYIVCPSEKRMMVLFTFLKKNRKKKVMVFFSTCMSVKYHHELFNYI--DLPVMSIHGX 389
Q Y+ P +++ +LF F++ + K K +VF S+C V++ +E F + + ++ +HG
Sbjct: 259 NQFYLTVPLTEKLDILFGFIRTHLKFKTIVFLSSCKQVRFVYETFRRMRPGISLLHLHGK 318
Query: 390 XXXXXXXXXXXXXCNAESGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTAR 569
++ +L CTD+ ARGLD PAVDW++Q D P+D YIHRVGRTAR
Sbjct: 319 QKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTAR 378
Query: 570 GLGTSGHALLFLRPEELGFLRYLKQSKVTLNEF*ILME*SCGYXLQLKNL 719
SG+ALL L P E FL+ L+ K+ + + QL+NL
Sbjct: 379 -YNRSGNALLLLLPSEEAFLKRLESKKIAVERINVKDGKKTSIRNQLQNL 427
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 114 bits (274), Expect = 2e-26
Identities = 70/200 (35%), Positives = 104/200 (52%), Gaps = 1/200 (0%)
Frame = +3
Query: 36 LDFEEEVKQIIKLLPKRRQTMLFSATQTKKTEALTSLALKHEPVYVGVDDHREQATVDSL 215
+DF + +I+K++P R+T+LFSAT T K E L +L H+PV V V + +TVD+L
Sbjct: 204 MDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQRASL-HQPVRVAVSS--KFSTVDTL 260
Query: 216 EQGYIVCPSEKRMMVLFTFLKKNRKKKVMVFFSTCMSVKYHHELFNYIDLPVMSIHGXXX 395
Q Y+ P + + L + + +++F T + L + + +HG
Sbjct: 261 IQRYLFFPFKHKDTYLVYLVNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLS 320
Query: 396 XXXXXXXXXXXCNAESGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGL 575
+ L+ TDVAARGLDIP VD ++ YD P D K YIHRVGRTAR
Sbjct: 321 QSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARA- 379
Query: 576 GTSGHALLFLRPEEL-GFLR 632
G +G ++ + +L FLR
Sbjct: 380 GRAGKSIALVTQYDLEPFLR 399
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 105 bits (251), Expect = 1e-23
Identities = 71/216 (32%), Positives = 109/216 (50%), Gaps = 9/216 (4%)
Frame = +3
Query: 36 LDFEEEVKQIIKLLPKRRQTMLFSATQTKKTEALTSLALKHEPVYVGV---DDHREQATV 206
+ F+ ++ II LPK+R+T LFSAT + +A V V V + T
Sbjct: 169 MGFQRTLQSIISQLPKQRRTGLFSATMNDTVSSFLKIAGLRNSVRVSVTVTSKKIDTRTP 228
Query: 207 DSLEQGYIVCPSEKRMMVLFTFLKKNRKKKVMVFFSTCMSVKYHHELFNYIDLP--VMSI 380
SL +V P ++ + L +K +VFFS+C SV+Y + LF LP ++++
Sbjct: 229 SSLAIQSLVIPPIYKVQCMIHLLCTIEYEKAIVFFSSCASVEYFNSLFLTYKLPFEIVAL 288
Query: 381 HGXXXXXXXXXXXXXXCNA-ESGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVG 557
HG + + +L TD+A+RGLDIP VD+++Q DPP DPK + HR G
Sbjct: 289 HGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCG 348
Query: 558 RTARGLGTSGHALLFL---RPEELGFLRYLKQSKVT 656
R R G +G A++ L R EE L +++ +T
Sbjct: 349 RAGRA-GRAGVAIVLLNDGREEEYEELLRVRKVPIT 383
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 102 bits (244), Expect = 7e-23
Identities = 65/188 (34%), Positives = 99/188 (52%), Gaps = 3/188 (1%)
Frame = +3
Query: 42 FEEEVKQIIKLLPKRRQTMLFSATQTKKTEALTSLALKHEPVYVGVDDHREQATVDSLEQ 221
F +E+ +II+ PK RQTMLFSAT T K + L L+L + PV V VD+ ++ T L Q
Sbjct: 422 FADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSL-NRPVRVFVDN--KKTTAKLLTQ 478
Query: 222 GYI-VCPSEK--RMMVLFTFLKKNRKKKVMVFFSTCMSVKYHHELFNYIDLPVMSIHGXX 392
++ V P + R +L K+ ++ ++FF + +F + L IHG
Sbjct: 479 EFVRVRPQRELLRPAMLIYLCKELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSL 538
Query: 393 XXXXXXXXXXXXCNAESGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARG 572
+ + LL TDVA+RG+DI ++ ++ Y+ P + Y+HRVGRTAR
Sbjct: 539 SQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARA 598
Query: 573 LGTSGHAL 596
G SG A+
Sbjct: 599 -GRSGRAI 605
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 93.5 bits (222), Expect = 3e-20
Identities = 62/216 (28%), Positives = 107/216 (49%), Gaps = 7/216 (3%)
Frame = +3
Query: 42 FEEEVKQIIKLLP--KRRQTMLFSATQTKKTEALTSLALKHE--PVYVGVDDHREQATVD 209
F +++ +LP + RQT+LF+AT T L K+ P+++ + +
Sbjct: 170 FADDLDDCFSVLPASEDRQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPS 229
Query: 210 SLEQGYIVCPSEKRMMVLFTFLK--KNRKKKVMVFFSTCMSVKYHHELFNYIDLPVMSIH 383
+L+Q YI S+ R L L +N KK ++F + + + + + ++L V +H
Sbjct: 230 TLQQSYIFVSSQVREAYLVHLLTIPENAKKSAIIFVNRTRTAELIYSILRLLELRVTELH 289
Query: 384 GXXXXXXXXXXXXXXCNAESGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRT 563
+ IL+ TDVA+RGLDIP+V ++ +D P DP +YIHRVGRT
Sbjct: 290 SEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRT 349
Query: 564 ARGLGTSGHALLFLRPEELGFLRYLKQSKVT-LNEF 668
AR G SG ++ + ++ + ++ T L+E+
Sbjct: 350 ARA-GRSGESISIVTERDVDLVHAIEDRVGTKLSEY 384
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 92.3 bits (219), Expect = 8e-20
Identities = 52/194 (26%), Positives = 92/194 (47%)
Frame = +3
Query: 36 LDFEEEVKQIIKLLPKRRQTMLFSATQTKKTEALTSLALKHEPVYVGVDDHREQATVDSL 215
+D +++++ + P ++Q M+FSAT + + + +++ P+ + VDD + T+ L
Sbjct: 213 VDMRRDIQEVFRATPPQKQVMMFSATLSNEIRPICKKFMQN-PLEIYVDDETK-LTLHGL 270
Query: 216 EQGYIVCPSEKRMMVLFTFLKKNRKKKVMVFFSTCMSVKYHHELFNYIDLPVMSIHGXXX 395
+Q Y+ + + + L +V++F + L + P + IHG
Sbjct: 271 QQHYVKLEEKAKNRKINDLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLP 330
Query: 396 XXXXXXXXXXXCNAESGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGL 575
+ + I + TDV RG+DI V+ ++ YD PD P Y+HRVGR R
Sbjct: 331 QEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGR-F 389
Query: 576 GTSGHALLFLRPEE 617
GT G A+ F EE
Sbjct: 390 GTKGLAITFSSSEE 403
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 85.8 bits (203), Expect = 7e-18
Identities = 52/202 (25%), Positives = 102/202 (50%), Gaps = 1/202 (0%)
Frame = +3
Query: 42 FEEEVKQIIKLLPKRRQTMLFSATQTKKTEALTSLALKHEPVYVGVDDHREQATVDSLEQ 221
F++++ I +LLP Q +L SAT + +T+ ++ +P+ + V +++ T++ ++Q
Sbjct: 178 FKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFMR-DPIRILVK--KDELTLEGIKQ 234
Query: 222 GYIVCPSEK-RMMVLFTFLKKNRKKKVMVFFSTCMSVKYHHELFNYIDLPVMSIHGXXXX 398
Y+ E+ ++ L + + ++F +T V + E D V S+HG
Sbjct: 235 FYVAVEKEEWKLDTLCDLYETVTVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQ 294
Query: 399 XXXXXXXXXXCNAESGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLG 578
S IL+ TD+ ARG+D+ V ++ YD P + + YIHR+GR R G
Sbjct: 295 AQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGR-FG 353
Query: 579 TSGHALLFLRPEELGFLRYLKQ 644
G ++ F+ +++ +R ++Q
Sbjct: 354 RKGVSINFVTNDDVRMMREIEQ 375
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 84.6 bits (200), Expect = 2e-17
Identities = 40/69 (57%), Positives = 51/69 (73%)
Frame = +3
Query: 441 SGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEEL 620
S ILLCTDVAARGLD+P VD +VQYD P +Y+HR+GRTAR G +G A++FL P+E
Sbjct: 497 SHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLHRIGRTARA-GHNGAAIMFLLPKES 555
Query: 621 GFLRYLKQS 647
++ LK S
Sbjct: 556 EYINLLKSS 564
Score = 47.2 bits (107), Expect = 3e-06
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 10/115 (8%)
Frame = +3
Query: 36 LDFEEEVKQIIKL---LPKRRQTMLFSATQTKKTEALTSLALK-----HEPVYVGVDDHR 191
L + E IIK +P R+ TML SAT + L+ ALK + +D
Sbjct: 319 LSYLESQSSIIKKDLSIPSRKVTMLCSATMKDTVKRLSDSALKDALYLKSSIVEETNDGY 378
Query: 192 EQATVDSLEQGYIVCPSEKRMMVLFTFLKKNRK--KKVMVFFSTCMSVKYHHELF 350
QA + L Q Y+V P + R++ L L+ + + KK+++F S SV +H E F
Sbjct: 379 SQAP-EQLLQRYVVVPPKLRLVSLVALLRSHVRSYKKIIIFLSCSDSVDFHFEAF 432
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 84.2 bits (199), Expect = 2e-17
Identities = 55/202 (27%), Positives = 98/202 (48%), Gaps = 1/202 (0%)
Frame = +3
Query: 42 FEEEVKQIIKLLPKRRQTMLFSATQTKKTEALTSLALKHEPVYVGVDDHREQATVDSLEQ 221
F+E++ I + LP Q ++ SAT + +T+ PV + V R++ T++ L+Q
Sbjct: 180 FKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMTN-KFTTNPVRILVK--RDELTLEGLKQ 236
Query: 222 GYIVCPSEK-RMMVLFTFLKKNRKKKVMVFFSTCMSVKYHHELFNYIDLPVMSIHGXXXX 398
+I E+ + L + ++F ++ V + E + V S+HG
Sbjct: 237 YFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQ 296
Query: 399 XXXXXXXXXXCNAESGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLG 578
S +L+CTD+ ARG+D+ V ++ YD P + + YIHR+GR+ R G
Sbjct: 297 KERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGR-FG 355
Query: 579 TSGHALLFLRPEELGFLRYLKQ 644
G A+ F+ E++ LR ++Q
Sbjct: 356 RKGVAINFVTNEDVRILRDIEQ 377
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 81.0 bits (191), Expect = 2e-16
Identities = 59/206 (28%), Positives = 95/206 (46%), Gaps = 5/206 (2%)
Frame = +3
Query: 36 LDFEEEVKQIIK----LLPKRRQTMLFSATQTKKTEALTSLALKHEPVYVGVDDHREQAT 203
+ FE +++ I++ + RQT++FSAT + + L LK YV + R +T
Sbjct: 344 MGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKD---YVFLSVGRVGST 400
Query: 204 VDSLEQGYI-VCPSEKRMMVLFTFLKKNRKKKVMVFFSTCMSVKYHHELFNYIDLPVMSI 380
+++ Q + V SEKR +L + ++F T + + P SI
Sbjct: 401 SENITQKVVHVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSI 460
Query: 381 HGXXXXXXXXXXXXXXCNAESGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGR 560
HG + + I++ T VA+RGLDIP V ++ YD P D +Y+HR+GR
Sbjct: 461 HGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGR 520
Query: 561 TARGLGTSGHALLFLRPEELGFLRYL 638
T R G +G A+ F G + L
Sbjct: 521 TGRA-GNTGQAVAFFNRNNKGIAKEL 545
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 80.6 bits (190), Expect = 3e-16
Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 1/155 (0%)
Frame = +3
Query: 177 VDDHREQATVDSLEQGYIVC-PSEKRMMVLFTFLKKNRKKKVMVFFSTCMSVKYHHELFN 353
+D + + A + +G I C P+EK + + + ++ K MVF + +K N
Sbjct: 353 LDANPQSAVASRVLEGLIECAPAEKDLYLYYLIMRY--PGKTMVFANGIEDIKRITPFLN 410
Query: 354 YIDLPVMSIHGXXXXXXXXXXXXXXCNAESGILLCTDVAARGLDIPAVDWIVQYDPPDDP 533
+ +P +H N G+L+CTDVAARG+DIP+V ++ Y P
Sbjct: 411 ELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTA 470
Query: 534 KEYIHRVGRTARGLGTSGHALLFLRPEELGFLRYL 638
Y+HR GRTAR G ++L P+EL L+ L
Sbjct: 471 DMYVHRSGRTARA-NEDGVSILMCGPKELSQLKRL 504
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 79.8 bits (188), Expect = 4e-16
Identities = 65/198 (32%), Positives = 93/198 (46%), Gaps = 4/198 (2%)
Frame = +3
Query: 36 LDFEEEVKQIIKLLPKRRQTMLFSATQTKKTEALTSLALKHEPVYVGVDDHREQATVDSL 215
L FE +V +II + RQT+LFSAT + EAL LK +PV + V A+ +
Sbjct: 583 LGFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLK-KPVEITVGGRSVVAS--EV 639
Query: 216 EQGYIVCPSEK---RMMVLFTFLKKNRKK-KVMVFFSTCMSVKYHHELFNYIDLPVMSIH 383
EQ V P E R++ L L N+ + +VF S SIH
Sbjct: 640 EQIVEVRPEESKFSRLLELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIH 699
Query: 384 GXXXXXXXXXXXXXXCNAESGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRT 563
G +L+ T V ARGLD+ ++ +V YD P+ ++Y+HRVGRT
Sbjct: 700 GGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRT 759
Query: 564 ARGLGTSGHALLFLRPEE 617
R G +G A+ F+ PE+
Sbjct: 760 GRA-GHTGVAVTFITPEQ 776
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 79.8 bits (188), Expect = 4e-16
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 2/180 (1%)
Frame = +3
Query: 84 RRQTMLFSATQTKKTEALTSLALKHEPVYVGVDDHREQATVDSLEQGY-IVCPSEKRMMV 260
RRQT++FSAT + L L EPV + + + + VD +EQ ++ K+
Sbjct: 449 RRQTIMFSATLPPRVANLAKSYLI-EPVMLTIGNIGQ--AVDRVEQRVEMISDDSKKWRR 505
Query: 261 LFTFLKKNR-KKKVMVFFSTCMSVKYHHELFNYIDLPVMSIHGXXXXXXXXXXXXXXCNA 437
+ L+ NR +++F + +++ + N I +++HG N
Sbjct: 506 VEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNK 565
Query: 438 ESGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEE 617
+ IL+ TD+A RG+DIP V ++ Y+ ++Y HR+GRT R G SG A+ FL PE+
Sbjct: 566 TADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRA-GKSGTAITFLGPED 624
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 77.8 bits (183), Expect = 2e-15
Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 1/190 (0%)
Frame = +3
Query: 36 LDFEEEVKQIIKLLPKRRQTMLFSATQTKKTEALTSLALK-HEPVYVGVDDHREQATVDS 212
+ FE ++++I+ + RQT++FSAT K+ + L L + V VG D +
Sbjct: 284 MGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQ 343
Query: 213 LEQGYIVCPSEKRMMVLFTFLKKNRKKKVMVFFSTCMSVKYHHELFNYIDLPVMSIHGXX 392
+ + R+ + K+R KV++F T P ++IHG
Sbjct: 344 IVEVVDNADKRARLGKDIEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDK 403
Query: 393 XXXXXXXXXXXXCNAESGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARG 572
+S I++ TDVA+RG+D+ + + YD P + ++Y+HR+GRT R
Sbjct: 404 AQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRA 463
Query: 573 LGTSGHALLF 602
G G A +
Sbjct: 464 -GAKGTAYTY 472
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 77.0 bits (181), Expect = 3e-15
Identities = 58/208 (27%), Positives = 89/208 (42%), Gaps = 6/208 (2%)
Frame = +3
Query: 36 LDFEEEVKQIIKLLPKRRQTML-FSATQTKKTEALTSLALKHEPVYVGVDDHREQATVDS 212
+ F E + I + + + L FSAT K + L + + D E T +
Sbjct: 203 MGFAESILNIHEAVTTTKTRKLCFSATMPPKVSNVFRGILGTDFKLINCLDPNEPPTHER 262
Query: 213 LEQGYIVCPSEK----RMMVLFTFLKKNRKKKVMVFFSTCMSVKY-HHELFNYIDLPVMS 377
+ Q I +K + +L N +++VF T V + L N++ +P
Sbjct: 263 VPQFVIETKLDKVFSSSLSLLQQLTSSNPSSRIIVFLPTISMVDFVGGVLENHLKIPCFI 322
Query: 378 IHGXXXXXXXXXXXXXXCNAESGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVG 557
+H +SGIL TDV ARG+D P + +VQ P + +YIHR+G
Sbjct: 323 LHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIG 382
Query: 558 RTARGLGTSGHALLFLRPEELGFLRYLK 641
RT R G +G A L L +E FL +K
Sbjct: 383 RTGRA-GKTGEAYLILLEQEKPFLNSIK 409
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 71.7 bits (168), Expect = 1e-13
Identities = 56/200 (28%), Positives = 89/200 (44%), Gaps = 8/200 (4%)
Frame = +3
Query: 42 FEEEVKQIIKLLPK-----RRQTMLFSATQTKKTEALTSLALKHE-PVYVGVDDHREQAT 203
FE++++ II P RQT+ FSAT + AL + LK + +G D+
Sbjct: 326 FEQDIRNIISHTPDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQN 385
Query: 204 VDSLEQGYIVCPSEKRMM--VLFTFLKKNRKKKVMVFFSTCMSVKYHHELFNYIDLPVMS 377
+ + + S++RM+ +L L K ++ F E V+
Sbjct: 386 ITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTLARKYNVVG 445
Query: 378 IHGXXXXXXXXXXXXXXCNAESGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVG 557
IHG + + +L+ TDVAARGLDIP V ++ P ++Y+HR+G
Sbjct: 446 IHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIG 505
Query: 558 RTARGLGTSGHALLFLRPEE 617
RT R T G A+ F P++
Sbjct: 506 RTGRA-NTKGTAITFFTPQD 524
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 71.7 bits (168), Expect = 1e-13
Identities = 40/110 (36%), Positives = 58/110 (52%)
Frame = +3
Query: 300 MVFFSTCMSVKYHHELFNYIDLPVMSIHGXXXXXXXXXXXXXXCNAESGILLCTDVAARG 479
+VF T V+Y EL V I+G ++ +L+ TDVA+RG
Sbjct: 350 LVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRG 409
Query: 480 LDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFL 629
+DIP + ++ YD P PK ++HRVGRTAR G +G A +R E+ G+L
Sbjct: 410 IDIPLLANVINYDFPPQPKVFVHRVGRTARA-GRTGWAYSLVRAEDAGYL 458
Score = 32.7 bits (71), Expect = 0.067
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +3
Query: 30 WKLDFEEEVKQIIKLLPKRRQTMLFSATQTKKTEALTSLALKHEPVYVGVD 182
+++ F ++ +I+ LP RQT+LFSAT + L+ +PV V +D
Sbjct: 226 FEMGFAAQLTEILHALPTSRQTLLFSATLPRTLVDFAKAGLQ-DPVLVRLD 275
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 70.5 bits (165), Expect = 3e-13
Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 2/182 (1%)
Frame = +3
Query: 99 LFSATQTKKTEALTSLALKHEPVYVGVDDHREQATVDSLEQGYIVCPSEKRMMVLFTFLK 278
LFSAT + E L + +P+ + V + A DS++Q + S+ +V+ +
Sbjct: 226 LFSATIPSRVEELAKVVTV-DPIRIIVG--LKDAATDSIDQRLLFVGSDTSKIVILRQMI 282
Query: 279 KNR--KKKVMVFFSTCMSVKYHHELFNYIDLPVMSIHGXXXXXXXXXXXXXXCNAESGIL 452
N K +V++F K + + ++ V IHG E +L
Sbjct: 283 SNGELKPRVVIFVQDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVL 342
Query: 453 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEELGFLR 632
+ TD+ ARG+D V ++ +D P YIHR+GRT R G +G A+ F E+ +++
Sbjct: 343 IATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRA-GNTGQAVTFFTKEDGEYIK 401
Query: 633 YL 638
+
Sbjct: 402 LI 403
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 63.3 bits (147), Expect = 4e-11
Identities = 44/189 (23%), Positives = 85/189 (44%)
Frame = +3
Query: 39 DFEEEVKQIIKLLPKRRQTMLFSATQTKKTEALTSLALKHEPVYVGVDDHREQATVDSLE 218
+F ++Q++ PK RQ L+SAT + L ++P + + D + T+ +
Sbjct: 202 EFTPIIEQLLSYFPKNRQISLYSATFPLIVKNFMDKHL-NKPYEINLMD---ELTLRGVT 257
Query: 219 QGYIVCPSEKRMMVLFTFLKKNRKKKVMVFFSTCMSVKYHHELFNYIDLPVMSIHGXXXX 398
Q Y +++ L T K + + ++F ++ V+ + + H
Sbjct: 258 QYYAFVDESQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQ 317
Query: 399 XXXXXXXXXXCNAESGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLG 578
N L+C+D+ RG+DI AV+ ++ +D P + + Y+HR+GR+ R G
Sbjct: 318 SHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR-FG 376
Query: 579 TSGHALLFL 605
G A+ F+
Sbjct: 377 HRGLAISFI 385
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 62.9 bits (146), Expect = 5e-11
Identities = 58/215 (26%), Positives = 91/215 (42%), Gaps = 20/215 (9%)
Frame = +3
Query: 75 LPKRRQTMLFSATQTKKTEALTSLALKHEPVYV-------GVDDHRE---QATVDSLE-- 218
LP Q ++FSAT T+ + SL L H P V VDD E A V S+
Sbjct: 348 LPSPLQKLVFSATLTRDPSKIASLKL-HNPRLVLVQNKDMEVDDGGEIEDDAIVFSVPPT 406
Query: 219 -QGYIVCPSEKRMMVLFTFLKKNRKKKVMVFFSTCMSVKYHHELFNYIDLPVMS------ 377
Q Y V S ++ ++L+ + ++ F + + H L I +
Sbjct: 407 LQEYHVSVSSEKPILLYHLIHSKNLTNILCFVKSNEAAARLHRLLELIHESLNQSFSCGL 466
Query: 378 IHGXXXXXXXXXXXXXXCNAESGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVG 557
+ +L+C+D+ ARG+D+ ++ YDPP + Y+HR+G
Sbjct: 467 FTSSLSRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIG 526
Query: 558 RTARGLGTSGHALLFLRPEE-LGFLRYLKQSKVTL 659
RTAR G G A ++ E F + +KQ + TL
Sbjct: 527 RTARA-GREGFAWTLVQSHEGHHFSKLVKQLRRTL 560
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 56.0 bits (129), Expect = 6e-09
Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 7/197 (3%)
Frame = +3
Query: 48 EEVKQIIKLLPKRRQTMLFSATQTKKTEALTSLALKHEPVYVGVDDHREQATVDSLEQGY 227
++ +I LLP+ Q +LFSAT +++ E A + P + E+ +V+ ++Q Y
Sbjct: 274 DQSMRIKHLLPRNTQIVLFSATFSERVE---KYAERFAPNANEIRLKTEELSVEGIKQLY 330
Query: 228 IVCPSEK-RMMVLFTFLKKNRKKKVMVFFSTCMSVKYHHELFNYIDLPVMSIHGXXXXXX 404
+ C SE+ + VL + ++F + + V + G
Sbjct: 331 MDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQ 390
Query: 405 XXXXXXXXCNAESGILLCTDVAARGLDIPAVDWIVQYDPP------DDPKEYIHRVGRTA 566
S +L+ T+V ARG+D+ V+ +V YD P DP+ Y+HR+GRT
Sbjct: 391 RDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTG 450
Query: 567 RGLGTSGHALLFLRPEE 617
R G G ++ F+ ++
Sbjct: 451 R-FGRVGVSINFVHDKK 466
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 48.8 bits (111), Expect = 9e-07
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Frame = +3
Query: 471 ARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPE-ELG 623
ARGLD V ++ +D P + K YIHR+GRTAR G G A+ F+ P+ E+G
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARA-GKPGTAMSFVVPKSEVG 437
Score = 38.7 bits (86), Expect = 0.001
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Frame = +3
Query: 42 FEEEVKQIIKLLPKRRQTMLFSATQTKKTEALTSLALKHEPVYVGVDDHREQATVDSLEQ 221
+ E++K + + LP+ Q+ L SAT +K +L L ++ P + V D ++A+ L Q
Sbjct: 181 YNEDMKTLSRSLPRGTQSFLMSATLSKNIASLQKLVCRN-PFILAVKD--KEAS-GKLTQ 236
Query: 222 GYIVCPSEKRMMVLFTFLK-KNRKKKVMVF---FSTCMSVKYHHELFNYIDLPVMS 377
+ C + + ++ + LK + K K+++F + C +K E F L + S
Sbjct: 237 YVVKCSEQDKFLLAYILLKLRLIKGKILIFVNEINRCYRLKLFLEQFGLKSLVLNS 292
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 38.7 bits (86), Expect = 0.001
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 438 ESGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTAR 569
E L+ T + GLDI VD I+ YD P + R+GRT R
Sbjct: 492 EVNTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQRMGRTGR 535
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 36.7 bits (81), Expect = 0.004
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +3
Query: 450 LLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTAR 569
L+ T + GLDI D I+ YD P I R+GRT R
Sbjct: 535 LVATSIGEEGLDIGDTDMIICYDASSSPIRTIQRMGRTGR 574
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 34.3 bits (75), Expect = 0.022
Identities = 18/58 (31%), Positives = 34/58 (58%)
Frame = +3
Query: 447 ILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPEEL 620
+L+ T VA G+D+P+ + +++++ +Y+ GR AR + + L+FL EEL
Sbjct: 426 VLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGR-ARAMASK--FLIFLNTEEL 480
>SPAC513.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 100
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = +1
Query: 295 RLWYSFQPVCLSNTTMNFS-----IILIFL*CPYMENNNKRSVQQHSSS 426
R+W S +CL T +N I+L+ L ++NN KR ++ + S
Sbjct: 12 RIWSSLNIICLMVTFLNVQLSKTPIVLMPLFIALLKNNRKRETKKQTIS 60
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 106 LNNIVCRRFGNNFMICLTSSSKSNFQYPVKP 14
LN + R FG M +TSS+ + Q PV+P
Sbjct: 127 LNKDMRRDFGMTSMSSITSSTPTPSQLPVRP 157
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,475,789
Number of Sequences: 5004
Number of extensions: 75272
Number of successful extensions: 261
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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