Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_P19
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.14 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   4.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   7.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   9.3  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
 Frame = +3

Query: 387  PGXXXXPXPPXXXXSXPQPPXGXLXPP-PPXAPPP 488
            P     P PP    S P PP     P  PP APPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
 Frame = +3

Query: 405 PXPPXXXXSXPQPPXGXLX--PPPPXAPPP 488
           P P       P PP G     PPPP  PPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/34 (35%), Positives = 13/34 (38%)
 Frame = +3

Query: 387 PGXXXXPXPPXXXXSXPQPPXGXLXPPPPXAPPP 488
           P     P P       P PP   +  PPP  PPP
Sbjct: 736 PPAVIVPTPAPAPIPVP-PPAPIMGGPPPPPPPP 768



 Score = 22.6 bits (46), Expect(2) = 6.3
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = -2

Query: 294 PXPPPPGFFXXKXPXGGAXPP 232
           P PPPPG      P     PP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783



 Score = 21.0 bits (42), Expect(2) = 6.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 306 IXXGPXPPPP 277
           I  GP PPPP
Sbjct: 757 IMGGPPPPPP 766


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
 Frame = +3

Query: 405 PXPPXXXX--SXPQPPXGXLXPPPPXAPP 485
           P PP      S P PP G   PPPP  PP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPP--PP 366


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +3

Query: 411  PPXXXXSXPQPPXGXLXPPPPXAPPP 488
            PP      P+P  G    PPP   PP
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPP 1218


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +3

Query: 414 PXXXXSXPQPPXGXLXPPPPXAPPP 488
           P      P PP G   P  P  PPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,387,854
Number of Sequences: 5004
Number of extensions: 18338
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)