Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_P16
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    36   0.007
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    34   0.022
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    28   1.9  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    27   2.5  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   2.5  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    27   3.3  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    27   4.4  
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...    26   7.7  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   7.7  
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...    26   7.7  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    26   7.7  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    26   7.7  

>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 21/64 (32%), Positives = 33/64 (51%)
 Frame = -3

Query: 650 AELKYLRCITNAIMPYLLKNDDIQNSVFRVLVREIFPGWVLLSLTDVLADPYILNTLIIL 471
           A+ +YLR  T  ++  +L N    + +   LV E+     LL L   ++DP   N LII 
Sbjct: 210 AQKRYLRNWTTQVLSIILPNYYETSPLVLSLVTEVIINTTLLPLVSYISDPDFFNYLIIQ 269

Query: 470 ATGN 459
           A+G+
Sbjct: 270 ASGS 273


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 34.3 bits (75), Expect = 0.022
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -3

Query: 341 DFVINDQEYFYAFMQYMKNTSHIHLLQFYKDIKSFQMKIL 222
           +++I D +Y+Y     M +  H +L ++Y+D  +FQ K L
Sbjct: 305 NYMIRDDQYWYLVRAVMSDGKHRNLCRYYEDFFNFQTKFL 344


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
 Frame = -3

Query: 425 YKVEFLETFVRQTESLYAQRCKLLKIDLDFVINDQEYFYAFMQYMKNTSHIHLL----QF 258
           + V  LET + Q  S   Q CK   I+   +  D    +  ++ +   S +H+L    Q 
Sbjct: 310 FDVNQLETRILQLFSKVVQLCKSEDIEGSILNKDMTQLHHLLENLSKESRLHILLQLSQL 369

Query: 257 YKDIKSFQM 231
           Y     FQ+
Sbjct: 370 YYKYNDFQL 378


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -3

Query: 161 SVYLSQRSAHRVPLHPALATELFELLQSRDSIRR*SEV*LIMPRPRRS 18
           S +++  S HR P H   +      L+SR SIRR   V     RP RS
Sbjct: 108 STHVASSSRHRSPSHNDSSPSTQSSLKSRGSIRRYKSVREGSHRPGRS 155


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = -3

Query: 428 NYKVEFLETFVRQTESLYAQRCKLLKIDLDFVINDQEYFYAFMQYMKNTSHIHLLQFYKD 249
           N   E ++T V Q +S    R     I  + ++  + Y  A + Y    S      FYKD
Sbjct: 210 NLAEEDIQTRVIQPDSGLVVRSFAAAISDNDILVQRGYMDALLNYFPIQS-----TFYKD 264

Query: 248 IKSFQMKILN 219
           +K F +K+L+
Sbjct: 265 VKPFDLKLLH 274


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 470 ATGNERMAQLPASPNYKVEFLETFVRQTESLYAQRCKLL 354
           A GN+ + + P  P YK E   +F+      Y  RC  L
Sbjct: 350 AHGNQELKEPPRHPKYKSERCRSFMMYGYCPYGLRCCFL 388


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -2

Query: 774 FSVITELFLRARXVITRCVRPAGRGAVALEAGPPPRGCEQ-KRGAQVSEVHHER 616
           +  ITE  +  + +++ C   A  G + +  G P  GC    R      VH++R
Sbjct: 163 YRAITEKQVVEKAILSHCHALANAGELVMVLGQPGSGCSTFLRSVTSDTVHYKR 216


>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -2

Query: 339 LRHKRSGIF---LCFHAVHEEHESHTSAAVLQGHQIISNEDL 223
           L  KR+G+    LC H V  E+E  TS A L+  +I +N+ L
Sbjct: 36  LGRKRAGVDEFPLCIHLVSNEYEQITSEA-LEAARICANKYL 76


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +1

Query: 613 IAFVMHLRYLSSAFLFA 663
           I FV+H R L++AFLFA
Sbjct: 633 IRFVIHYRSLATAFLFA 649


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -2

Query: 339 LRHKRSGIF---LCFHAVHEEHESHTSAAVLQGHQIISNEDL 223
           L  KR+G+    LC H V  E+E  TS A L+  +I +N+ L
Sbjct: 36  LGRKRAGVDEFPLCIHLVSNEYEQITSEA-LEAARICANKYL 76


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 349 IFNSLQRCAYNDSVCLTKVSR 411
           +FN L     NDS CLTK +R
Sbjct: 213 VFNVLDHPDINDSTCLTKEAR 233


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 502 SASTSVNDNNTQPGNISLTSTRNTEFCIS 588
           +A+T+   +NT PGN+++ S  N +  IS
Sbjct: 189 TATTTSETDNTIPGNLNMPSVANVQQRIS 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,024,607
Number of Sequences: 5004
Number of extensions: 59054
Number of successful extensions: 199
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)