Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_P16
         (847 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-43|CAB55131.2|  917|Caenorhabditis elegans Hypothetical...    37   0.016
U80842-16|AAB37955.2|  232|Caenorhabditis elegans Hypothetical p...    31   1.4  
AF098995-6|AAC67480.1|  311|Caenorhabditis elegans F-box b prote...    30   1.8  
Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF016681-4|AAB66174.2|  276|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z29117-2|CAA82374.1|  216|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U53149-1|AAD31546.1|  328|Caenorhabditis elegans Prion-like-(q/n...    29   4.2  
U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical pr...    29   5.5  
AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical...    29   5.5  
Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z82279-1|CAB05259.2|  321|Caenorhabditis elegans Hypothetical pr...    28   9.6  
Z81034-4|CAB02729.1|  541|Caenorhabditis elegans Hypothetical pr...    28   9.6  
Z47358-8|CAA87433.1|  702|Caenorhabditis elegans Hypothetical pr...    28   9.6  
Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical pr...    28   9.6  
AL031620-5|CAA20926.1|  277|Caenorhabditis elegans Hypothetical ...    28   9.6  

>AL117204-43|CAB55131.2|  917|Caenorhabditis elegans Hypothetical
           protein Y116A8C.26a protein.
          Length = 917

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 8/103 (7%)
 Frame = -3

Query: 362 KLLKIDLDFVINDQEYFYAFMQYMKNTSHIHLLQFYKDIKSF------QMKILNP-DLSE 204
           +L+++ L  ++ +      F +++K+    + +  Y  I+ F      QM+ L+  +LSE
Sbjct: 371 QLVQLPLHVILTNSIALSQFCEFLKSAGGQNYIDLYLAIEGFKVSVEHQMRSLSKGELSE 430

Query: 203 SEKASLHGEACD-IYSVYLSQRSAHRVPLHPALATELFELLQS 78
           S+      EA   +Y  YLS+ +  RVPL  AL +   + L++
Sbjct: 431 SDAYETVKEAAKYMYDQYLSEEAITRVPLEDALISRFLQSLKN 473



 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = -3

Query: 647 ELKYLRCITNAIMPYLLKNDDIQNSVFRVLVREIFPGWVLLSLTDVLADPYILNTLII 474
           E  YL  + + I+  ++  +D +    R L+RE+    V+L   D L+DP  +  LI+
Sbjct: 223 ENAYLHDLVDIILYLIMPPEDFRCRPLRFLLREVVVRKVILPTLDYLSDPNEIFQLIV 280


>U80842-16|AAB37955.2|  232|Caenorhabditis elegans Hypothetical
           protein ZC239.15 protein.
          Length = 232

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
 Frame = -3

Query: 527 LSLTDVLADP--YILNTLIILATGNERMAQLPASPNYKVEFLETFVRQTESLYAQRCKLL 354
           L L ++L +   Y+L+ LI L   N ++ +L  +P  K+ F+E+  +  + L  Q+  +L
Sbjct: 74  LKLKELLVEAQFYLLDGLIELC--NSKI-ELVEAPKIKLRFIESDEQFLQILAVQQKPML 130

Query: 353 KIDLDFVINDQEYFYAFMQYMKNTSHIHLLQFY 255
            I+   V ND    Y F  Y     + H    Y
Sbjct: 131 IIEFCMVGNDMSIPYNFNLYEFMEKYSHQFDIY 163


>AF098995-6|AAC67480.1|  311|Caenorhabditis elegans F-box b protein
           protein 26 protein.
          Length = 311

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -3

Query: 365 CKLLKIDLDFVINDQEYFYAFMQYMKNTSHIHLLQFYKDIKSFQMKILNPDL 210
           CK   + L F    +E FY   + +KN   +HL  F   I+ +Q   L P L
Sbjct: 119 CKNQGVALIFESIMRERFYELYEIIKNIKIVHLEPFSSQIQDYQRLTLFPSL 170


>Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical
           protein C49C3.13 protein.
          Length = 499

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -1

Query: 184 TARPATSTPCTCRNAPPTECRCTPRWPRSCSSC 86
           T +P T+TP T R       +C P W      C
Sbjct: 350 TTKPTTTTPTTTRTPVDCSAKCDPFWVSYSDGC 382


>AF016681-4|AAB66174.2|  276|Caenorhabditis elegans Hypothetical
           protein F22E5.8 protein.
          Length = 276

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
 Frame = -3

Query: 527 LSLTDVLADP--YILNTLIILATGNERMAQLPASPNYKVEFLETFVRQTESLYAQRCKLL 354
           L++ ++LA+   Y+L+ LI L +      Q   +P  K+ F+E   +  + L AQ+  +L
Sbjct: 74  LTVKELLAEAQFYLLDELIELCSLKIEPVQ---APKIKLRFIENDSQLLQILAAQQKPML 130

Query: 353 KIDLDFVINDQEYFYAFMQYMKNTSHIHLLQFY 255
            I+   V ND    Y F  Y       H    Y
Sbjct: 131 IIEYCMVGNDMSIPYNFNLYEFIEKQSHQFDIY 163


>Z29117-2|CAA82374.1|  216|Caenorhabditis elegans Hypothetical
           protein C48B4.3 protein.
          Length = 216

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 494 ILNTLIILATGNERMAQLPASPNYKVEFLETFVR 393
           + N L +  T  E+M +L  S NY VE  ET +R
Sbjct: 4   VANALAVSQTMMEKMQKLEISKNYDVEKFETLLR 37


>U53149-1|AAD31546.1|  328|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 16
           protein.
          Length = 328

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 211 CLKARRLHCTARPATSTPCTCRNAPPTECRCTPRWPRSCSSCCR 80
           C +A +  C A+   +   +C  A  + C+C P + +  + CCR
Sbjct: 285 CAQACQTGCVAQCQPAN-VSCMPASTSTCQCQPNYSQCGNQCCR 327


>U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical
           protein D1044.7 protein.
          Length = 400

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 490 SIYGSASTSVNDNNTQPGNISLTSTRNTEFC-ISSFLSRY 606
           ++  S  T   DNN QP N  +T   NT FC  SS   RY
Sbjct: 357 NLCSSGQTVQLDNNNQPINCLVTVCPNTSFCQYSSSGQRY 396


>AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical
           protein Y51A2D.15 protein.
          Length = 1222

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
 Frame = -3

Query: 422 KVEFLETFVRQTESLYAQ---RCKLLKIDLDFVINDQEYFYAFMQYMKNTSHIHLLQFYK 252
           K E LE  +++++ L A+     K L+ +LD  + +  +    +   KNT    LL+   
Sbjct: 559 KCEILEEKLQESDFLLAKSRDEAKKLQFELDEALEETSHVTRSLSSEKNTLKAKLLELQD 618

Query: 251 DIKSFQMKILN 219
            +++  +++LN
Sbjct: 619 QVEAQTLELLN 629


>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -1

Query: 187 CTARPATSTPCTCRNAP-PTECRCTPRWPRSC 95
           C A P  + PC C+ AP P  C C+   P  C
Sbjct: 163 CVAAPVPTNPC-CQPAPRPAPCVCSAPRPVPC 193


>Z82279-1|CAB05259.2|  321|Caenorhabditis elegans Hypothetical
           protein R03C1.1 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 184 TARPATSTPCTCRNAPPTECRCTPRWPRSCSSCC 83
           T  P T+T     N P T C C P++ +   + C
Sbjct: 253 TQYPLTTTCVMYVNVPTTACSCLPQYDQCAQNVC 286


>Z81034-4|CAB02729.1|  541|Caenorhabditis elegans Hypothetical
           protein C15C6.3 protein.
          Length = 541

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +2

Query: 686 SRATAPRPAGRTQRVMTQRARRKSSVITE--NXYRLARQN 799
           SR+  P P G  +++  Q+ +R+ SV+T   + YR+ +++
Sbjct: 302 SRSPPPYPPGHDKKMFQQKKKRQDSVVTGDIHAYRIPKRS 341


>Z47358-8|CAA87433.1|  702|Caenorhabditis elegans Hypothetical
           protein ZK1307.6 protein.
          Length = 702

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 21/85 (24%), Positives = 36/85 (42%)
 Frame = +1

Query: 499 GSASTSVNDNNTQPGNISLTSTRNTEFCISSFLSRYGMIAFVMHLRYLSSAFLFAAAGWR 678
           G  S  ++D++T P + SL          SS  S         H  + SS+  +    ++
Sbjct: 102 GQNSAFMSDSSTHPSSSSLAGLGALATAPSSSQSSLSSHPHQHHNHHSSSSSSYHDY-YQ 160

Query: 679 ASFEGNGAAAGRSNTACNDXTRTEE 753
            +  G+G  +  +  AC D TR+ E
Sbjct: 161 GTSSGSGNTSPTAQAACMDDTRSSE 185


>Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical protein
            C28A5.2 protein.
          Length = 1218

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 641  KYLRCITNAIMPYLLKNDDIQNSVFRVLVREIFPGWVLLSLTDVL 507
            +YLRC  NA  P +    +I++ VF +      PG++++    +L
Sbjct: 913  RYLRCTVNAARPAI---SEIESDVFELWTVHGLPGFIIVEKVPLL 954


>AL031620-5|CAA20926.1|  277|Caenorhabditis elegans Hypothetical
           protein C18B12.5 protein.
          Length = 277

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 498 RISEHVGQ*Q*HPTGEYFSDEY 563
           RI +H+G+ Q H TGEY   +Y
Sbjct: 240 RIFDHIGEVQDHNTGEYLGYKY 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,328,680
Number of Sequences: 27780
Number of extensions: 356161
Number of successful extensions: 1216
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)