Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_P11
(746 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023844-11|CAA19525.3| 489|Caenorhabditis elegans Hypothetical... 32 0.50
Z34533-1|CAA84302.3| 730|Caenorhabditis elegans Hypothetical pr... 30 1.5
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 1.5
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 1.5
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 1.5
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 27 2.1
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 29 3.5
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 29 3.5
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 3.5
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 3.5
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 3.5
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 29 4.6
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 8.1
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 28 8.1
U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical pr... 28 8.1
U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical pr... 28 8.1
U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical pr... 28 8.1
U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical pr... 28 8.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 8.1
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 28 8.1
AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical ... 28 8.1
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 28 8.1
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 28 8.1
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 28 8.1
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 28 8.1
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 28 8.1
>AL023844-11|CAA19525.3| 489|Caenorhabditis elegans Hypothetical
protein Y48A6B.10 protein.
Length = 489
Score = 31.9 bits (69), Expect = 0.50
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +2
Query: 512 PPPXGXXXPPPPXPXGXKKKKKKK 583
PP PPPP P KKKKK K
Sbjct: 326 PPSSASTSPPPPDPENQKKKKKLK 349
>Z34533-1|CAA84302.3| 730|Caenorhabditis elegans Hypothetical
protein B0285.1 protein.
Length = 730
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +1
Query: 514 PPXGGXXPPPPPP 552
PP GG PPPPPP
Sbjct: 692 PPSGGHAPPPPPP 704
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +1
Query: 514 PPXGGXXPPPPPP 552
PP GG PPPPPP
Sbjct: 763 PPPGGCPPPPPPP 775
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 512 PPPXGXXXPPPPXPXGXKK 568
PPP G PPPP P G K
Sbjct: 763 PPPGGCPPPPPPPPPGGFK 781
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 475 GGGGXXXXXGXXXPPXGGXXPPPPPP 552
GG G P GG PPPPPP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPP 765
Score = 27.9 bits (59), Expect = 8.1
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3
Query: 513 PPPXGXXPPPPP 548
PPP G PPPPP
Sbjct: 762 PPPPGGCPPPPP 773
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +1
Query: 514 PPXGGXXPPPPPP 552
PP GG PPPPPP
Sbjct: 763 PPPGGCPPPPPPP 775
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 512 PPPXGXXXPPPPXPXGXKK 568
PPP G PPPP P G K
Sbjct: 763 PPPGGCPPPPPPPPPGGFK 781
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 475 GGGGXXXXXGXXXPPXGGXXPPPPPP 552
GG G P GG PPPPPP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPP 765
Score = 27.9 bits (59), Expect = 8.1
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3
Query: 513 PPPXGXXPPPPP 548
PPP G PPPPP
Sbjct: 762 PPPPGGCPPPPP 773
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +1
Query: 514 PPXGGXXPPPPPP 552
PP GG PPPPPP
Sbjct: 346 PPPGGCPPPPPPP 358
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 512 PPPXGXXXPPPPXPXGXKK 568
PPP G PPPP P G K
Sbjct: 346 PPPGGCPPPPPPPPPGGFK 364
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 475 GGGGXXXXXGXXXPPXGGXXPPPPPP 552
GG G P GG PPPPPP
Sbjct: 323 GGPPPPPPPGGLPPISGGPPPPPPPP 348
Score = 27.9 bits (59), Expect = 8.1
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3
Query: 513 PPPXGXXPPPPP 548
PPP G PPPPP
Sbjct: 345 PPPPGGCPPPPP 356
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 27.1 bits (57), Expect(2) = 2.1
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Frame = +1
Query: 475 GGGGXXXXX---GXXXPPXGGXXPPPPPP 552
GGGG PP G PPPPPP
Sbjct: 28 GGGGCAPAAPACAPPPPPMCGCAPPPPPP 56
Score = 21.4 bits (43), Expect(2) = 2.1
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +1
Query: 535 PPPPPPXXXXKKKKKK 582
PPPPPP +KK
Sbjct: 55 PPPPPPMCGCGCGRKK 70
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +3
Query: 513 PPPXGXXPPPPPXXXG 560
PPP G PPPPP G
Sbjct: 298 PPPRGHFPPPPPHFMG 313
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +3
Query: 513 PPPXGXXPPPPPXXXG 560
PPP G PPPPP G
Sbjct: 298 PPPRGHFPPPPPHFMG 313
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 502 GXXXPPXGGXXPPPPPP 552
G PP G PPPPPP
Sbjct: 287 GSPPPPRAGSPPPPPPP 303
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 502 GXXXPPXGGXXPPPPPP 552
G PP G PPPPPP
Sbjct: 308 GSPPPPRAGSPPPPPPP 324
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 502 GXXXPPXGGXXPPPPPP 552
G PP G PPPPPP
Sbjct: 293 GSPPPPRAGSPPPPPPP 309
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = +1
Query: 460 FXXXXGGGGXXXXXGXXXPPXG-GXXPPPPPP 552
F GGGG G G G PPPPPP
Sbjct: 186 FGPGGGGGGMGGGGGSGGSGGGSGRFPPPPPP 217
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +1
Query: 475 GGGGXXXXXGXXXPPXGGXXPPPPPP 552
GGGG G GG PPPPPP
Sbjct: 93 GGGGGGCGGGGGC--GGGCAPPPPPP 116
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +1
Query: 475 GGGGXXXXXGXXXPPXGGXXPPPPPP 552
GGGG G GG PPPPPP
Sbjct: 37 GGGGGCGGGGGCG---GGCAPPPPPP 59
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 27.9 bits (59), Expect = 8.1
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +1
Query: 514 PPXGGXXPPPPPP 552
PP G PPPPPP
Sbjct: 290 PPSSGMWPPPPPP 302
>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
domain protein 1 protein.
Length = 1346
Score = 27.9 bits (59), Expect = 8.1
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3
Query: 513 PPPXGXXPPPPP 548
PPP G PPPPP
Sbjct: 792 PPPLGIIPPPPP 803
>U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical
protein ZK180.5a protein.
Length = 542
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 502 GXXXPPXGGXXPPPPPP 552
G PP G PPPPPP
Sbjct: 54 GYPRPPIGYGAPPPPPP 70
>U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical
protein ZK180.5b protein.
Length = 497
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 502 GXXXPPXGGXXPPPPPP 552
G PP G PPPPPP
Sbjct: 54 GYPRPPIGYGAPPPPPP 70
>U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical
protein ZK180.5c protein.
Length = 399
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 502 GXXXPPXGGXXPPPPPP 552
G PP G PPPPPP
Sbjct: 54 GYPRPPIGYGAPPPPPP 70
>U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical
protein C16B8.3 protein.
Length = 164
Score = 27.9 bits (59), Expect = 8.1
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3
Query: 513 PPPXGXXPPPPP 548
PPP G PPPPP
Sbjct: 143 PPPTGQYPPPPP 154
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 27.9 bits (59), Expect = 8.1
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +1
Query: 514 PPXGGXXPPPPPP 552
PP G PPPPPP
Sbjct: 300 PPSSGMWPPPPPP 312
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Frame = +1
Query: 475 GGGGXXXXXGXXXPPXG--GXXPPPPPP 552
G GG PP G G PPPPPP
Sbjct: 652 GSGGGSSMPMPVPPPGGLGGFMPPPPPP 679
>AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical
protein Y40B1A.5 protein.
Length = 134
Score = 27.9 bits (59), Expect = 8.1
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3
Query: 513 PPPXGXXPPPPP 548
PPP G PPPPP
Sbjct: 88 PPPHGLGPPPPP 99
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Frame = +1
Query: 475 GGGGXXXXXGXXXPPXG--GXXPPPPPP 552
G GG PP G G PPPPPP
Sbjct: 652 GSGGGSSMPMPVPPPGGLGGFMPPPPPP 679
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 27.9 bits (59), Expect = 8.1
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +1
Query: 514 PPXGGXXPPPPPP 552
PP G PPPPPP
Sbjct: 240 PPVGAGAPPPPPP 252
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 27.9 bits (59), Expect = 8.1
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +1
Query: 514 PPXGGXXPPPPPP 552
PP G PPPPPP
Sbjct: 226 PPVGAGAPPPPPP 238
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 27.9 bits (59), Expect = 8.1
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +1
Query: 514 PPXGGXXPPPPPP 552
PP G PPPPPP
Sbjct: 226 PPVGAGAPPPPPP 238
>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
protein.
Length = 1346
Score = 27.9 bits (59), Expect = 8.1
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3
Query: 513 PPPXGXXPPPPP 548
PPP G PPPPP
Sbjct: 792 PPPLGIIPPPPP 803
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,330,326
Number of Sequences: 27780
Number of extensions: 237371
Number of successful extensions: 3132
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2007
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -