Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_P04
         (853 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0092 - 28307180-28307380,28307471-28307936,28308008-283081...    29   6.2  
10_08_0151 - 15229235-15229243,15230032-15230103,15230369-152304...    29   6.2  
03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235           29   6.2  

>11_08_0092 -
           28307180-28307380,28307471-28307936,28308008-28308117,
           28308206-28308493,28309024-28309059
          Length = 366

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
 Frame = +2

Query: 524 GEHGAXPPTRVPGARXPEKHXG-----TLPRELPPRXGLGSAPXWTDPSHPR 664
           G H A    +  G R  ++H G       PR++ P     S+P  T P+HPR
Sbjct: 185 GRHDAVHGEQPDGERDADEHRGQPHQRAAPRDVQP-PSPSSSPATTSPAHPR 235


>10_08_0151 -
           15229235-15229243,15230032-15230103,15230369-15230459,
           15230553-15230695,15231910-15232022,15232171-15232315
          Length = 190

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +2

Query: 347 RGWRAAACTRDTRG 388
           R WRAAAC RD RG
Sbjct: 15  RWWRAAACARDRRG 28


>03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235
          Length = 1293

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 299 SEVTSIREVGDEAPERRGWRAAACTRDTRGALPAS 403
           ++ T     G  +  RR WRAAA TR +  A+P+S
Sbjct: 129 TKATGAATAGSVSSRRRAWRAAAVTRRS-SAIPSS 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,358,822
Number of Sequences: 37544
Number of extensions: 232167
Number of successful extensions: 835
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)