Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_O21
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    27   3.1  
SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces po...    27   4.1  
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    27   4.1  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    26   7.2  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   7.2  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   7.2  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    25   9.5  

>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/44 (34%), Positives = 17/44 (38%)
 Frame = +1

Query: 394 SLPGRNAIHRRPGXXXXXXXXXXXXXKMRTASQSAAADAPSRPP 525
           SLP RN + + PG             K    SQ A  D P  PP
Sbjct: 7   SLPTRNELVKEPGKVPPLDIDFKRSVKSSQFSQCAITDEPLYPP 50


>SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 439

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 535 RWHQEDGTARRRLRTAMRSAFSSSLTSPNILLKSNPVGGVS 413
           R+  ++ T RR L   M  A+   +T P+I +   P+GG++
Sbjct: 208 RFGVDEVTLRRALFEQMGGAYPELITRPDIKVFLPPIGGLT 248


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 270 GRPRGGAACLVVVLTAGTPLLCPGSDPGRRSDVG 169
           GRP  G  C +  L+ G+ +  P   PG +  +G
Sbjct: 219 GRPENGGNCDIKNLSRGSKVFLPVHVPGAKLSIG 252


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +2

Query: 131 RAHPLNDSPALLHPTSDLRPGSEPGQSRGVPAVNTTTRHAAPPRGRPTDGSSRR 292
           R  PLN SP+ L P S+         + G+    + T    PP  R T G + R
Sbjct: 337 RRSPLN-SPSQLDPISNENESDTDDSNTGLRNRTSPTAAPPPPSRRKTGGLNTR 389


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 188  PGSEPGQSRGVPAVNTTTRHAAP 256
            P  +PG S G+ A+NT T    P
Sbjct: 1621 PPPQPGNSSGMSAMNTNTTSTTP 1643


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 188  PGSEPGQSRGVPAVNTTTRHAAP 256
            P  +PG S G+ A+NT T    P
Sbjct: 1621 PPPQPGNSSGMSAMNTNTTSTTP 1643


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 140 PLNDSPALLHPTSDLRPGSEPGQSRGVPA 226
           P N++PA    ++  RP S P  S  VPA
Sbjct: 258 PANETPASSSSSAKARPVSVPDMSSPVPA 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,498,486
Number of Sequences: 5004
Number of extensions: 48429
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)