Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_O21
(802 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1023 + 30201374-30201487,30201601-30202285,30202402-302025... 33 0.20
02_04_0656 - 24769069-24770814,24771552-24771608,24773307-247735... 30 1.9
02_03_0093 - 15120951-15121344,15121658-15121953,15122119-151224... 30 1.9
08_02_0065 - 11849664-11849939 29 3.3
09_04_0082 + 14408962-14409436,14413356-14413780,14414067-14414528 29 5.7
05_05_0228 + 23454434-23455456,23456151-23456555,23456657-23457004 29 5.7
05_01_0570 + 5061600-5062142,5062790-5062972 29 5.7
11_06_0022 + 19321886-19321918,19323059-19323131,19323587-193236... 28 7.5
10_01_0330 + 3614562-3614574,3614676-3615118,3617700-3617825,361... 28 7.5
09_06_0015 - 20234231-20234344,20234846-20234902,20234968-202351... 28 7.5
03_02_0367 + 7834072-7834479,7834555-7834779,7834858-7835082,783... 28 7.5
12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768... 28 9.9
09_06_0361 - 22520186-22520581 28 9.9
04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220 28 9.9
04_01_0350 - 4610444-4610668,4612181-4612969 28 9.9
02_05_0781 + 31715100-31715672 28 9.9
>04_04_1023 +
30201374-30201487,30201601-30202285,30202402-30202506,
30202561-30203939
Length = 760
Score = 33.5 bits (73), Expect = 0.20
Identities = 26/81 (32%), Positives = 38/81 (46%)
Frame = +2
Query: 38 SYEVPAPRGRAGYVRLNDLQVLRADRGPKDFRAHPLNDSPALLHPTSDLRPGSEPGQSRG 217
S + P PRGR G VR + L +R D G ++ + A +H + R G+ ++R
Sbjct: 105 SKDAPLPRGRRGTVRSSKL--IRPDDGEEEGKEDENRGENAPVH--GEGRRGAS-RRARA 159
Query: 218 VPAVNTTTRHAAPPRGRPTDG 280
P V TTR A P + G
Sbjct: 160 EPVVAPTTRRRAAPTSKIETG 180
>02_04_0656 -
24769069-24770814,24771552-24771608,24773307-24773582,
24773675-24773965
Length = 789
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -3
Query: 530 APGGRDGASAAADCDAVRIFVVADVAEHTVEEQ 432
A GGR G + A+D AVR F++A A+ V ++
Sbjct: 65 AGGGRYGGAGASDAKAVRDFLLASAADPPVPDE 97
>02_03_0093 -
15120951-15121344,15121658-15121953,15122119-15122419,
15123233-15123628,15123883-15124067
Length = 523
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +2
Query: 137 HPLNDSPALLHPTSDLRPGSEPGQSRGVPAVNTTTRHAAPPR--GRPTDGSSRR*STTN- 307
HP + P L TS+ +PG P ++ G+ + +T R PPR G P S R S++
Sbjct: 405 HP--EGPKLHAITSESQPGQAPVRTGGMRLMTSTGRDNQPPRSSGVPPSPSEWRSSSSRW 462
Query: 308 DVG 316
D+G
Sbjct: 463 DLG 465
>08_02_0065 - 11849664-11849939
Length = 91
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 443 VEEQPGRRCIAFRPGRLVLAQRGIPEHQRHRPGGLVGPPY 324
VEE+P RC A P + RG H+ H PG P +
Sbjct: 4 VEEEP--RCAAAAPIAATTSSRGHRHHRGHHPGAASTPAF 41
>09_04_0082 + 14408962-14409436,14413356-14413780,14414067-14414528
Length = 453
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/45 (42%), Positives = 21/45 (46%)
Frame = -3
Query: 452 EHTVEEQPGRRCIAFRPGRLVLAQRGIPEHQRHRPGGLVGPPYRG 318
E +E R AFR L A RG E Q+ GG GP YRG
Sbjct: 34 EADLEAIAAREQRAFRYEALSAATRGFSERQKLGQGGF-GPVYRG 77
>05_05_0228 + 23454434-23455456,23456151-23456555,23456657-23457004
Length = 591
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 166 TPDVRSPSGVRTWTE*GGSRGQHYNQTRGATPRTPDRRVVE 288
+P +RSPSG++ + + G N+ R T R PD ++++
Sbjct: 497 SPMLRSPSGLKNFNAELKAAGYDLNRWRETTRRRPDLQILD 537
>05_01_0570 + 5061600-5062142,5062790-5062972
Length = 241
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 204 DRVGGFPRSTLQPDTRRHPEDARPTGRRGDSRQPTTS 314
D VGG ++ RR P TG G +R+PT++
Sbjct: 157 DGVGGARGRAVRGSARRRPRKEETTGINGTARRPTST 193
>11_06_0022 +
19321886-19321918,19323059-19323131,19323587-19323680,
19324383-19324499,19324584-19324641,19324713-19325114
Length = 258
Score = 28.3 bits (60), Expect = 7.5
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +2
Query: 20 RVEGRTSYEVPAPRGRAGYVRLNDLQVLRADRGPKDFRAHPLNDS-PALLHPTSDLRPGS 196
R GR P R GYV+ D + AD+G A P ++ P +H T + P +
Sbjct: 139 RGRGRGRGRPPTKRKEVGYVQFEDESSMFADQG----EALPGEETVPETIHGTESVPPST 194
Query: 197 EP 202
P
Sbjct: 195 HP 196
>10_01_0330 +
3614562-3614574,3614676-3615118,3617700-3617825,
3618379-3618786,3618871-3619311,3619399-3619779
Length = 603
Score = 28.3 bits (60), Expect = 7.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 617 HRGWSWXTPSSTPXRXG 667
HRGW+W SS P + G
Sbjct: 360 HRGWTWGVGSSVPWKYG 376
>09_06_0015 -
20234231-20234344,20234846-20234902,20234968-20235111,
20235581-20235745,20235817-20236005,20236086-20236326,
20236412-20236512,20236704-20237241,20238101-20238132,
20238677-20238760
Length = 554
Score = 28.3 bits (60), Expect = 7.5
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Frame = +3
Query: 189 RGQNLDRVGGFPRSTLQPDT-RRHPEDA--RPTGRRGDSRQPTTSVSAVRRPYQAARAVP 359
+G ++VG R + DT + ED +P RR R P+ + + A P
Sbjct: 253 QGLATEKVGS-SRQPIDEDTLQEETEDVEEQPLVRRRSRRIPSGNTES---------AQP 302
Query: 360 LVFRDTPLGQNQPAGSERDTPPTGLLFNSMFGDVSDDEN 476
+ D+P +QP G+ D G F S +G +S +E+
Sbjct: 303 VYTVDSPPSSSQPQGNLNDRQNNGDEFPSEWGGISSEEH 341
>03_02_0367 +
7834072-7834479,7834555-7834779,7834858-7835082,
7835333-7836219,7836298-7836468,7836551-7836839,
7836925-7836963,7837069-7837107
Length = 760
Score = 28.3 bits (60), Expect = 7.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 617 HRGWSWXTPSSTPXRXG 667
HRGW+W SS P + G
Sbjct: 243 HRGWTWGVGSSVPWKYG 259
>12_01_0830 -
7678038-7678444,7678996-7680943,7681231-7681983,
7682701-7682824,7683590-7683723
Length = 1121
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/40 (45%), Positives = 20/40 (50%)
Frame = +1
Query: 160 TLTPDVRSPSGVRTWTE*GGSRGQHYNQTRGATPRTPDRR 279
TLTP RSPS S G N TRGA+P +RR
Sbjct: 151 TLTPPRRSPSPASRRMS-ATSSGPTLNGTRGASPVKTNRR 189
>09_06_0361 - 22520186-22520581
Length = 131
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -3
Query: 365 HQRHRPGGLVGPPYRGDRRRWLSTIASTTRRSGVLGVAPRVWL 237
HQ+ + G + YRG RRR A+ R S GV RVWL
Sbjct: 5 HQQQQQEGELVAKYRGVRRRPWGKFAAEIRDSSRHGV--RVWL 45
>04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220
Length = 1053
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 185 RPGSEPGQSRGVPAVNTTTRHAAPPRGRPTDGSS 286
R G G+ P+ TTRHA P R DG +
Sbjct: 583 RRGGRGGRRLPSPSTRPTTRHALPGEDRSHDGGA 616
>04_01_0350 - 4610444-4610668,4612181-4612969
Length = 337
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -3
Query: 551 YRHFSALAPGGRDGASAAADCDAVRIFVVADVAE 450
YRH A G +GA AA +AVR VA E
Sbjct: 59 YRHLDTAAVYGTEGAVGAAVAEAVRCGAVASRGE 92
>02_05_0781 + 31715100-31715672
Length = 190
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 242 RHAAPPRGRPTDGSSRR*STT 304
RHAA P RP+ +SRR STT
Sbjct: 64 RHAAAPPPRPSASTSRRSSTT 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,269,940
Number of Sequences: 37544
Number of extensions: 475786
Number of successful extensions: 1873
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1873
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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