Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_O18
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    33   0.036
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    31   0.19 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.4  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    27   2.4  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    27   4.1  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    26   5.5  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    25   9.6  

>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 33.5 bits (73), Expect = 0.036
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -2

Query: 577 VSLXXRXNYTSQPAKRVVIXRXPRPSGNRMSIPPQQKKPTLDDDDFPSLS 428
           V L     +T++PA+     R PR   +  +   QQ  PTL + DFP+L+
Sbjct: 235 VLLDIEQTFTARPARGGRPNRAPRRGPSETASKTQQAPPTLSETDFPALA 284


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = -2

Query: 508 RPSGNRMSIPPQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPKVTMINSQEMQAXKNN 329
           +P      + P +KK TLDD D P+ S   D       S +         ++E +    N
Sbjct: 84  KPKKEHPKLRPSKKKATLDDWDIPTSSTETDTISTTHTSYIPTLLAKQEENEETKETTTN 143

Query: 328 QTQSQPKKS 302
           + +S P  S
Sbjct: 144 KNESLPGTS 152


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 669 PXXGRXGTXTXPEPXPPXXPPXXPATIP 586
           P      T T P P PP  PP  P ++P
Sbjct: 405 PLGNASRTSTPPVPTPPSLPPSAPPSLP 432



 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -2

Query: 304 SQRSTEAFPALSATAHSPAAPPQWITVS 221
           S R  E  P+LSA A  P  PP   TVS
Sbjct: 238 SSRPPERVPSLSAPAPPPIPPPSNGTVS 265


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
 Frame = -2

Query: 487 SIPPQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPKVTMINSQEMQAXKNNQT---QS 317
           SI  +     L+     S++   +  P+  A +  P     ++  E  A  N  T   + 
Sbjct: 552 SISSRLPSSNLEQGSSSSVTKSPESMPDPSAKASSPVTSKGVSINEKSAVNNYATPLSKP 611

Query: 316 QPK--KSQRSTEAFPALSATAHSPAAPP 239
           QPK  K  +    F A S  A  PA+PP
Sbjct: 612 QPKDTKGSKLGNTFVAPSPAASLPASPP 639


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 334 NNQTQSQPKKSQRSTEAFPALSATAHS 254
           +NQT   P    +STE  P  S T HS
Sbjct: 269 SNQTFMAPASGLQSTEEIPQFSKTGHS 295


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = -2

Query: 439 PSLSMGRDDHPNIGASSVQPPKVTMINSQEMQAXKNNQTQSQPKKSQRSTEAFPALSATA 260
           PS++M   + PN        P    I+S   Q   +    S+  K+ + T+A  AL    
Sbjct: 343 PSMNMFAQNGPNTSLLPTAMPSDVSISSSLQQQPIHPSYDSRFSKAPQGTDALAALGYGT 402

Query: 259 HSPAA 245
            S AA
Sbjct: 403 PSSAA 407


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 21/86 (24%), Positives = 38/86 (44%)
 Frame = -2

Query: 550 TSQPAKRVVIXRXPRPSGNRMSIPPQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPKV 371
           TSQ +    +   P P+   + I P+Q K        PS  +   D+   G  SV  P  
Sbjct: 221 TSQTSSSSTLNLPPEPASREVKIFPKQGKRIFS----PSTGI---DYETTGQHSVNSPPS 273

Query: 370 TMINSQEMQAXKNNQTQSQPKKSQRS 293
           T  + + +   K+  T+S+P+  +++
Sbjct: 274 TYKHRRSLN--KSFATRSEPQTPRKN 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,219,904
Number of Sequences: 5004
Number of extensions: 37669
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)