Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_O18
(806 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0645 - 25814302-25814759,25814853-25815005,25815032-258152... 32 0.62
01_06_0295 + 28276505-28276576,28276682-28276888,28277492-282777... 30 1.9
03_02_0644 + 10118790-10119559,10120252-10120432,10120526-101207... 30 2.5
08_02_1296 - 25951758-25951983,25952134-25952159,25952626-259527... 29 4.4
07_03_1280 + 25434933-25436153 29 4.4
07_02_0009 - 11716174-11716435,11716837-11717459,11718385-117184... 29 5.8
12_02_0643 - 21461123-21461902 28 7.6
09_03_0025 - 11665969-11666417,11666490-11666594,11666667-116668... 28 7.6
08_02_0778 + 21119812-21119941,21120030-21120463,21120576-211206... 28 7.6
07_03_1731 - 29102403-29102720,29103529-29103735,29103937-291052... 28 7.6
04_04_0592 + 26477974-26479311 28 7.6
>11_06_0645 -
25814302-25814759,25814853-25815005,25815032-25815214,
25815342-25815531,25815624-25815784,25816136-25816623,
25817035-25817075
Length = 557
Score = 31.9 bits (69), Expect = 0.62
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 241 GVRRGSGRWRTAQGTPPYSAGTSLVATGFGYF 336
G RRG+GRWR A+G+ Y GT ++ YF
Sbjct: 523 GGRRGTGRWRRAEGSGDY--GTDNISNTSTYF 552
>01_06_0295 +
28276505-28276576,28276682-28276888,28277492-28277740,
28277928-28278080,28278158-28278313,28278411-28278570,
28278664-28278815,28278906-28278993,28279111-28279223,
28279271-28279345,28279435-28279669,28279760-28280148
Length = 682
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -2
Query: 478 PQQKKPTLDDDDFPSLSMGRDDHP-NIGASSVQPPKVTMINSQEMQAXKNNQTQSQPKKS 302
P KP L P SMG + ++G +++QPPK +++S+ ++A K + S
Sbjct: 496 PSPSKP-LSTKKAPRHSMGGANRRLSLGGATMQPPKTDILHSKSVRAAKKTEEIGTLSPS 554
Query: 301 QRSTE 287
R +
Sbjct: 555 SRGLD 559
>03_02_0644 +
10118790-10119559,10120252-10120432,10120526-10120725,
10120834-10120992,10122375-10122741
Length = 558
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 329 PNPVATKEVPAEYGGVPCAVRHRPLPRRTPAVD 231
PN + T E YGG+ CA+ P+ RT ++D
Sbjct: 433 PNHI-TPEAWGNYGGIKCAMETLPITNRTTSLD 464
>08_02_1296 -
25951758-25951983,25952134-25952159,25952626-25952710,
25952828-25952959,25953037-25953180,25953254-25953312,
25953381-25953687,25954211-25954292,25954369-25954502,
25954587-25954680,25954751-25954874,25955136-25955195
Length = 490
Score = 29.1 bits (62), Expect = 4.4
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = -2
Query: 430 SMGRDDHPNIGASSVQPPKVTMINSQEMQAXKNNQTQSQPKKSQRSTEAFPALSAT---A 260
S D HP S+QPP+ T+ N+ Q + + Q +K + PA++ T A
Sbjct: 287 SSKEDQHPTT-PPSLQPPETTLDNNTVNQIIPSAKRALQFEKELHIDQPSPAIANTIQVA 345
Query: 259 HSPAAPPQWITVSKGK 212
+ PQ + +SK K
Sbjct: 346 TNQLYHPQQVDLSKEK 361
>07_03_1280 + 25434933-25436153
Length = 406
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 228 VIHCGGAAGEWAVADSAGNASVLRWDFFGCDW 323
V+ CGG A +++ G AS+ W+F G W
Sbjct: 293 VVACGGRAYVVVLSELLGTASLRLWEFAGGAW 324
>07_02_0009 -
11716174-11716435,11716837-11717459,11718385-11718469,
11719346-11719374
Length = 332
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = -2
Query: 421 RDDHPNIGASSVQPPKVTMINSQEMQAXKNNQTQSQPKKSQRS--TEAFPALSATAHSPA 248
+D HP + + + + EM+ N+ P + EA PA +ATA +P
Sbjct: 258 KDSHPELARQTT----AQLTHPSEMRDENENKETPFPAVVMEAPKVEATPAAAATAPAPP 313
Query: 247 APP 239
APP
Sbjct: 314 APP 316
>12_02_0643 - 21461123-21461902
Length = 259
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -3
Query: 684 RTRTSPXXGRXGTXTXPEPXPPXXPP 607
R SP GR T P P PP PP
Sbjct: 209 RESPSPLRGRPRTPPPPRPRPPTTPP 234
>09_03_0025 -
11665969-11666417,11666490-11666594,11666667-11666856,
11666933-11667120,11667240-11667571,11667654-11667940,
11668027-11668911
Length = 811
Score = 28.3 bits (60), Expect = 7.6
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = -2
Query: 553 YTSQPAKRVVIXRXPRPSGNRMS--IPPQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQP 380
+T+Q I P+P ++++ P+++K LDDD+ G DD S +P
Sbjct: 315 HTAQGGGGPTIRPDPQPQTSKLADQTGPRKRKLVLDDDE------GDDDKSGDKGSPNKP 368
Query: 379 PKVTM 365
PK TM
Sbjct: 369 PKRTM 373
>08_02_0778 +
21119812-21119941,21120030-21120463,21120576-21120695,
21121356-21121898,21121988-21122172,21122255-21122425,
21122505-21122805
Length = 627
Score = 28.3 bits (60), Expect = 7.6
Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 6/125 (4%)
Frame = -2
Query: 562 RXNYTSQPAKRVVIXRXPRPSGNRMSIPPQQKKPTLDDDDFPSLSM-----GRD-DHPNI 401
R + P + +V+ PRPS PP+ K +++ P+LS+ G D D +I
Sbjct: 302 RKTFIQWPKEDIVVKMTPRPSRPTELTPPKSKL-SIEAPHGPALSVPHSPGGADMDLADI 360
Query: 400 GASSVQPPKVTMINSQEMQAXKNNQTQSQPKKSQRSTEAFPALSATAHSPAAPPQWITVS 221
A S+ P K T + Q + + K R P A S Q++ +S
Sbjct: 361 -AQSLAPIKTTR-KTDSFPPLVKGQKRERGKGKVRELAPKPKRGKAATSMPLHKQYMKLS 418
Query: 220 KGKDK 206
K K
Sbjct: 419 NAKRK 423
>07_03_1731 -
29102403-29102720,29103529-29103735,29103937-29105210,
29105298-29105734,29106370-29106764,29106921-29107051,
29109034-29109052
Length = 926
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = -2
Query: 469 KKPTLDDDDFPSLSMGRDDHPNIGASSVQPPKVTMINSQEMQAXKNNQTQSQPKKSQRS 293
K P+ DD ++ D +S+ P + S+ + NN+ S PK+ +RS
Sbjct: 85 KTPSDDDSRIKKKALDGGDSNGSSSSASNSPVTKVCRSKSRRRNLNNEEPSNPKQLRRS 143
>04_04_0592 + 26477974-26479311
Length = 445
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -3
Query: 675 TSPXXGRXGTXTXPEPXPPXXPPXXPAT 592
+SP T T P P PP PP PA+
Sbjct: 84 SSPPPPTPTTTTTPTPTPPLPPPAPPAS 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,100,101
Number of Sequences: 37544
Number of extensions: 338485
Number of successful extensions: 2092
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2042
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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