Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_O16
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    29   1.1  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    29   1.1  
SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomy...    28   1.5  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   2.0  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    27   4.5  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    26   6.0  

>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +2

Query: 380 RSHLAPLHHRTNSRVPGRPRTRHSIVPTRAERRPLARAVHPAFCAEEPKRDPIPFRAPQP 559
           R H    ++R  S +P   RTR +++ + +++ P+   V  +   +   +D IP +A  P
Sbjct: 319 RRHTQGTNNRRQSTIPPYARTRQNLLSSPSKQTPVNNVVDASVATQ---KDGIPGKAASP 375


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 18/84 (21%), Positives = 28/84 (33%)
 Frame = +1

Query: 169 EKGARSTCPAERLPTKPHRAPPHRLHETYGTAMRAESLALGGTRTDVKTGFHPRENPVEP 348
           EK   +      LP      P   L      A + + +  GG   ++ +   P      P
Sbjct: 14  EKNLNNASKYSELPIAYQEIPLQSLPPYPKVASKLKGVVAGGKENNIASFQKPSSKATRP 73

Query: 349 RLGRHTVSGAQEPPCTASPPDQQS 420
            +  +T      PP    PP +QS
Sbjct: 74  YIPSYTRLTYSVPPLPIPPPSEQS 97


>SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 215

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 593 PWPPTNSGLYIR--VTIASGXSAHTESSRGVH 682
           P PP NS LY R  ++  +G S+H+E +   H
Sbjct: 92  PLPPRNSSLYARFPLSAGAGASSHSEETTPSH 123


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = +1

Query: 352 LGRHTVSGAQEPPCTASPPDQQSSXR----APPHPALDSP 459
           +G+ + S A  PP   +PP  QS  R    APP P++  P
Sbjct: 115 IGKSSASAA--PPSAPAPPTPQSELRPPTSAPPRPSIPPP 152


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 139 PPISHRRLHLEKGARSTCPAERLPTKPHRAPPHRLHETYGTAMRAES 279
           P +S     L++  +S C     P+    APP +L+ +Y + + + S
Sbjct: 375 PELSASSAELDEKLKSQCNVSPSPSNISDAPPSKLNRSYSSPLASIS 421


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 93  PERKKGRREGPRSFTSPNFSQE 158
           P +KKG  +GP SF +P + ++
Sbjct: 45  PVKKKGSAKGPPSFVTPEYIEK 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,992,430
Number of Sequences: 5004
Number of extensions: 61266
Number of successful extensions: 199
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)