Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_O12
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    76   7e-15
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    64   2e-11
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S...    27   3.2  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    26   5.6  
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces...    25   9.7  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    25   9.7  

>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 75.8 bits (178), Expect = 7e-15
 Identities = 41/89 (46%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
 Frame = -1

Query: 350 SENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMGFEV-PFAPSGFKVRYLK 174
           SEN I WKI R  G  E    AE+EL  T  ++ W +PPIS+ F +  F  SG  V+YL+
Sbjct: 359 SENIINWKIPRFLGETELIFYAEVELSNTTNQQIWAKPPISLDFNILMFTSSGLHVQYLR 418

Query: 173 VFEPKLNYSDHDVIKWVRYIGRSGLYETR 87
           V EP  + S +  IKWVRY  R+G  E R
Sbjct: 419 VSEP--SNSKYKSIKWVRYSTRAGTCEIR 445


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
 Frame = -1

Query: 341 AIVWKIKRMAGMKETQLSAEIEL--LETDTKKKWTRPPISMGFEVP-FAPSGFKVRYLKV 171
           A+VW IK+ AG KE  + AE+ L  ++ +  +   + P+ + F +P F  SG +VRYLK+
Sbjct: 340 AMVWNIKKFAGGKEFFMRAEMGLPSVKNEDIQVQKKRPVQLKFAIPYFTTSGIQVRYLKI 399

Query: 170 FEPKLNYSDHDVIKWVRYIGRSG 102
            EPKLNY     + WVRY+ ++G
Sbjct: 400 TEPKLNY---HAMPWVRYVTQNG 419


>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
           Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 323 KRMAGMKETQLSAEIELLETDTKKKWTRPPISMGFEVPFAPSGFKVRY 180
           K++   + TQ+   +ELL T T+++W   P    +   +  S F+VRY
Sbjct: 229 KKVVPFQSTQMLRIMELLGTPTEERW---PGLKNYPEYYQLSSFEVRY 273


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 215 VPFAPSGFKVRYLKVFEPKLNYSDHDVIKW 126
           VP+  + +   YLK+F  K N S  D+ +W
Sbjct: 206 VPYFSTAWFQFYLKLFSQKDNVSSSDLTRW 235


>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 138 VMVRVIQFRFKHLQIADLESGGCKGNFEP 224
           +  R++  R  H  I  +E   CK  +EP
Sbjct: 53  IFARILDARAGHFSITPIEQTSCKQMYEP 81


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 132 DDVMVRVIQFRFKHLQIADLESGGCKGNFEPHGD 233
           DD ++ +I+ +F+HL +  +  GG  G+    GD
Sbjct: 149 DDALLLMIEHKFRHLPV--VSDGGPDGSAGDEGD 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,292,671
Number of Sequences: 5004
Number of extensions: 38794
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)