Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_O12
         (815 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760...    93   2e-19
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467...    61   1e-09
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604...    59   4e-09
10_08_0295 - 16581014-16583071                                         30   1.9  
04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391...    29   3.3  
03_01_0491 + 3720842-3720958,3721904-3723109                           29   4.4  
09_02_0139 - 4875234-4876210,4877532-4877932,4878056-4878135           29   5.8  

>02_05_0373 +
           28374298-28374380,28375126-28375303,28375975-28376065,
           28376162-28376256,28376379-28376468,28376789-28376837,
           28376941-28377079,28377224-28377340,28377437-28377527,
           28377604-28377746,28378009-28378123,28378439-28378483,
           28378565-28378645
          Length = 438

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 45/91 (49%), Positives = 62/91 (68%), Gaps = 2/91 (2%)
 Frame = -1

Query: 350 SENAIVWKIKRMAGMKETQLSAEIELLET-DTKKKWTRPPISMGFEVP-FAPSGFKVRYL 177
           S +++VWKI++  G  E  +SAE+EL+ T   KK W RPPI M F+VP F  SG +VR+L
Sbjct: 352 SIDSLVWKIRKFPGQTEATMSAEVELISTMGEKKSWNRPPIQMEFQVPMFTASGLRVRFL 411

Query: 176 KVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 84
           KV+E     S ++ ++WVRYI R+G YE RC
Sbjct: 412 KVWEK----SGYNTVEWVRYITRAGSYEIRC 438


>05_06_0262 -
           26746180-26746278,26746371-26746493,26746584-26746725,
           26746824-26746921,26747012-26747108,26747215-26747322,
           26747900-26748003,26748170-26748268,26748373-26748435,
           26748538-26748687,26748769-26748900
          Length = 404

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
 Frame = -1

Query: 344 NAIVWKIKRMAGMKETQLSAEIEL--LETDTKKKWTRPPISMGFEVP-FAPSGFKVRYLK 174
           +A+VWKIK   G KE    AE  L  + ++      + PI + FE+P F  SG +VRYLK
Sbjct: 318 DAMVWKIKSFPGGKEYMCRAEFSLPSITSEDGMPEKKAPIRVKFEIPYFTVSGIQVRYLK 377

Query: 173 VFEPKLNYSDHDVIKWVRYIGRSGLYETR 87
           + E     S +  + WVRYI  +G YE R
Sbjct: 378 IIEK----SGYQALPWVRYITMAGEYELR 402


>01_06_0412 +
           29159918-29160046,29160148-29160297,29160385-29160447,
           29160540-29160716,29160796-29160899,29162142-29162249,
           29162336-29162432,29162540-29162637,29162718-29162859,
           29162941-29163063,29163161-29163259
          Length = 429

 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
 Frame = -1

Query: 344 NAIVWKIKRMAGMKETQLSAEIEL--LETDTKKKWTRPPISMGFEVP-FAPSGFKVRYLK 174
           +A+VWK+K   G K+    AE  L  +  +      + PI + FE+P F  SG +VRYLK
Sbjct: 343 DAMVWKVKSFPGGKDYMCRAEFSLPSITAEEAAPEKKAPIRVKFEIPYFTVSGIQVRYLK 402

Query: 173 VFEPKLNYSDHDVIKWVRYIGRSGLYETR 87
           + E     S +  + WVRYI  +G YE R
Sbjct: 403 IIEK----SGYQALPWVRYITMAGEYELR 427


>10_08_0295 - 16581014-16583071
          Length = 685

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -2

Query: 487 KXRXCXKSXXQALPARTEDRXEDSNSAEHQRGATDLPXRGKRSIK 353
           + R   +   +ALP R ED  +D +    +R A D+P R +RS++
Sbjct: 278 RQRAAVRRGCRALPQRREDPEDDEDDNGRRRHAEDIPPR-RRSLR 321


>04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,
            3914729-3914823,3914854-3915213
          Length = 1428

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = +2

Query: 83   STWSRRVRSVRCSAPT**RHGPSNSVSVQTPSDSGP*IRRVQRELRTPWRWAGASTSSW- 259
            STW R    ++ + P      P   +  QTPS  GP   R  +   T W   GA  ++W 
Sbjct: 1260 STWERE-DELKSAHPHLFTRPPDGEIIWQTPSTKGPISGREVKSAETNW---GAIATAWP 1315

Query: 260  CRSRGAQSRQTA 295
             R R A+   TA
Sbjct: 1316 SRWRLAEGNVTA 1327


>03_01_0491 + 3720842-3720958,3721904-3723109
          Length = 440

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 439 TEDRXEDSNSAEHQRGATDLPXRGKRSIKPLRTLSCGRSNA 317
           TED   D NS+E+Q+   D   + ++  KP + L C R ++
Sbjct: 73  TEDSSADKNSSENQQQQGDTANQKEKLKKPDKILPCPRCSS 113


>09_02_0139 - 4875234-4876210,4877532-4877932,4878056-4878135
          Length = 485

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +2

Query: 221 TPWRWAGASTSSWCRSRGAQSR 286
           TP   A  STS WCRSRG   R
Sbjct: 377 TPISSAQQSTSIWCRSRGGNRR 398


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,956,653
Number of Sequences: 37544
Number of extensions: 323261
Number of successful extensions: 852
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)