Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_O10
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    27   3.3  
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces...    26   7.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   7.7  

>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -2

Query: 766 QACRVVTWRNARPR*NSRRDPVRGHCQAGSLTGAVHLSKNNAGVXRPAQR 617
           QA    TW NA    NS+ D    +  A + +GA+  +++NA    P  R
Sbjct: 111 QALSSATWDNAEDGENSKNDNYNENQSALTGSGAMESNEDNAEETSPFNR 160


>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 367 NPTLGEFCFAMIGRADIEGSKSNV-AMNAWLPQASYPCGNL 486
           NP    F  AM+  A  EGS +N    N  +PQA+ P  NL
Sbjct: 114 NPDFANFFQAMLQSAK-EGSDTNFQGENEQIPQATAPLKNL 153


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 481  NLSGTSC*KLFILKDR*AVLSQSL 552
            N+ G S  KLFI+KD   V+SQ L
Sbjct: 3491 NIGGRSPQKLFIVKDSGQVMSQDL 3514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,310,615
Number of Sequences: 5004
Number of extensions: 65810
Number of successful extensions: 161
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)