Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_O08
         (857 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    30   2.7  
03_01_0515 - 3864796-3865425                                           29   6.3  
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647     28   8.3  

>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 28/122 (22%), Positives = 32/122 (26%), Gaps = 3/122 (2%)
 Frame = -1

Query: 851 HPXXGPPPXATPSDXXXHARTXAXXLXXHXXXXPAXPGPRPGXXPDXXT-TXRRXTXRXP 675
           H    PPP   P     +               PA P P P       T T    + + P
Sbjct: 630 HSVLPPPPPPPPPPSLPNRLVPPPPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGP 689

Query: 674 PPLXAPAXPXXXXXLXPKRXPAKXAPXXXXRXXRXGXXXXPXPXXSXPXTXA--HXSXPL 501
           PP   P  P       P    A   P       R      P P    P   A    + P 
Sbjct: 690 PPPPPPPLPPANRTNGPGVPSAPPPPPPPPPANRSNGPSAPAPPLPPPLPAAANKRNPPA 749

Query: 500 PP 495
           PP
Sbjct: 750 PP 751


>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = -2

Query: 751 PXXPXXDPXXPPTXXPPTAXXRXXPRPPXXXQP 653
           P  P   P  PP   PP +  +  P PP    P
Sbjct: 92  PPPPAASPPPPPPSPPPPSPVKSSPPPPPAWSP 124


>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
          Length = 252

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 17/66 (25%), Positives = 21/66 (31%)
 Frame = -1

Query: 743 PGPRPGXXPDXXTTXRRXTXRXPPPLXAPAXPXXXXXLXPKRXPAKXAPXXXXRXXRXGX 564
           PGP+P   P           + P P   P  P       PK  P K  P    +  + G 
Sbjct: 159 PGPKPKPKPSPPKPKPGPKPKPPKPGPKPKPPKPGPK--PKPKPPKPGPKPKPKPPKPGP 216

Query: 563 XXXPXP 546
              P P
Sbjct: 217 KPKPGP 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,602,323
Number of Sequences: 37544
Number of extensions: 210149
Number of successful extensions: 946
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)