Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_O03
(813 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.36
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 1.4
07_03_1086 + 23858419-23859423,23859527-23859610 29 3.3
07_03_0846 - 21983581-21986055 29 3.3
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 3.3
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 29 4.4
11_06_0292 - 22015603-22015716,22015774-22016163 28 7.7
10_02_0131 + 5595135-5595184,5596121-5596289,5596376-5596655,559... 28 7.7
03_05_0183 - 21681673-21682524 28 7.7
01_06_0695 - 31292622-31293317 28 7.7
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.36
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +1
Query: 82 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 210
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -2
Query: 350 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 216
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 29.5 bits (63), Expect = 3.3
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Frame = -2
Query: 524 PVVRQVSFTLLMACR-CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA----- 363
P++++ T L+ CD N A + LVHAL AA A +A L
Sbjct: 119 PLLQEHGVTALLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLD 178
Query: 362 SKAEASLAESGKDMLTVEPRESGGSK 285
A AS+ +G L V E+GG++
Sbjct: 179 GSAAASIGRAGAIPLLVSLLETGGAR 204
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +1
Query: 208 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 357
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 437 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 339
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>08_02_0104 +
12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = +1
Query: 16 LSSDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKK 195
+S +SPG L R HD +L KSST + R E SR +K
Sbjct: 730 VSEADSPGDSL---RDVHDISLNLKLSLDSEKSSTKENSVRRNLEDAVQKLSRGVSANRK 786
Query: 196 TDSID 210
T+S++
Sbjct: 787 TESVE 791
>11_06_0292 - 22015603-22015716,22015774-22016163
Length = 167
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +1
Query: 622 KATSL*TLGCHKPSYPCGNFSGPLLLKTLFT--KGSIGRGFPQSPIXSG 762
K SL L C K +PCG+ P L K++ T +G + G SP G
Sbjct: 8 KPLSLRLLLCFKLPWPCGDLELPWLFKSISTLAQGRLVAGDLPSPSSDG 56
>10_02_0131 +
5595135-5595184,5596121-5596289,5596376-5596655,
5596738-5596834,5596931-5597055,5597145-5597223,
5597301-5597337
Length = 278
Score = 28.3 bits (60), Expect = 7.7
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Frame = -3
Query: 676 YHRDNWACGSQAFIATLLFDPSMSALPIIAKQIRQALDCSPIKRE------RELGLDPS* 515
YH + +A + LL + + II LD P+ RE + ++P+
Sbjct: 53 YHVERFAPSRKRLNLVLLDEQGTKMVAIIYDDQVDRLD--PLLREGSAYYVSRMSIEPA- 109
Query: 514 DRLVLPY*WLVVAIVILLSTRGTAVSDIWFMHSAERPVVRSYHPRD 377
R++L Y WL + + TR T +++I MH P++ P D
Sbjct: 110 -RMIL-YQWLADHAFVCVFTRDTTITEIANMHEKILPLLPPLMPLD 153
>03_05_0183 - 21681673-21682524
Length = 283
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 649 SQAFIATLLFDPSMSALPIIAKQIRQA 569
SQAF A LL D + +A+P++ Q R A
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +1
Query: 34 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 168
P L Q D PS++ SST S P HR L P R
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,605,264
Number of Sequences: 37544
Number of extensions: 534291
Number of successful extensions: 1636
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1635
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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