Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_O03
(813 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC114377-1|AAI14378.1| 44|Homo sapiens Unknown (protein for MG... 47 9e-05
L13744-1|AAA58361.1| 568|Homo sapiens AF-9 protein. 33 1.2
BX649194-1|CAE46213.1| 298|Homo sapiens hypothetical protein pr... 33 1.2
AL512635-1|CAH70705.1| 568|Homo sapiens myeloid/lymphoid or mix... 33 1.2
AL354879-1|CAI14771.1| 568|Homo sapiens myeloid/lymphoid or mix... 33 1.2
BC036089-1|AAH36089.1| 568|Homo sapiens myeloid/lymphoid or mix... 32 2.1
BC006350-1|AAH06350.1| 619|Homo sapiens BUD13 homolog (S. cerev... 31 5.0
U41221-1|AAA82080.1| 887|Homo sapiens hMSH2 protein. 31 6.5
U04045-1|AAA61870.1| 934|Homo sapiens hMSH2 protein. 31 6.5
U03911-1|AAA18643.1| 934|Homo sapiens hMSH2 protein. 31 6.5
L47583-1|AAB59564.1| 934|Homo sapiens DNA mismatch repair prote... 31 6.5
L47582-1|AAB59565.1| 934|Homo sapiens DNA mismatch repair prote... 31 6.5
L47581-1|AAA76858.1| 934|Homo sapiens DNA mismatch repair prote... 31 6.5
L47580-1|AAB59572.1| 810|Homo sapiens MSH2 protein. 31 6.5
L47579-1|AAB59571.1| 534|Homo sapiens MSH2 protein. 31 6.5
BC021566-1|AAH21566.1| 934|Homo sapiens mutS homolog 2, colon c... 31 6.5
AY601851-1|AAS99351.1| 934|Homo sapiens mutS homolog 2, colon c... 31 6.5
AK223284-1|BAD97004.1| 878|Homo sapiens mutS homolog 2 variant ... 31 6.5
AK222860-1|BAD96580.1| 878|Homo sapiens mutS homolog 2 variant ... 31 6.5
AC079775-2|AAY15096.1| 586|Homo sapiens unknown protein. 31 6.5
BC048251-1|AAH48251.1| 322|Homo sapiens ZDHHC12 protein protein. 30 8.7
AL441992-6|CAI15406.1| 210|Homo sapiens zinc finger, DHHC-type ... 30 8.7
>BC114377-1|AAI14378.1| 44|Homo sapiens Unknown (protein for
MGC:134704) protein.
Length = 44
Score = 46.8 bits (106), Expect = 9e-05
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = +3
Query: 591 MIGRADIEGSKSNVAMNAWLPQA 659
MIGRADIEGSKS+VAMNAW PQA
Sbjct: 1 MIGRADIEGSKSDVAMNAWPPQA 23
>L13744-1|AAA58361.1| 568|Homo sapiens AF-9 protein.
Length = 568
Score = 33.1 bits (72), Expect = 1.2
Identities = 22/92 (23%), Positives = 40/92 (43%)
Frame = +1
Query: 19 SSDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKT 198
SS S + S + S ++ S++ SST +S+P + + + S+D+R K
Sbjct: 158 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKPHKLMKEHKEKPSKDSREHKSA 217
Query: 199 DSIDLRDPNGLRRRVSRFECETRLVKSHCLEP 294
RD N + S+ E + +K + P
Sbjct: 218 FKEPSRDHNKSSKESSKKPKENKPLKEEKIVP 249
>BX649194-1|CAE46213.1| 298|Homo sapiens hypothetical protein
protein.
Length = 298
Score = 33.1 bits (72), Expect = 1.2
Identities = 22/92 (23%), Positives = 40/92 (43%)
Frame = +1
Query: 19 SSDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKT 198
SS S + S + S ++ S++ SST +S+P + + + S+D+R K
Sbjct: 158 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKPHKLMKEHKEKPSKDSREHKSA 217
Query: 199 DSIDLRDPNGLRRRVSRFECETRLVKSHCLEP 294
RD N + S+ E + +K + P
Sbjct: 218 FKEPSRDHNKSSKESSKKPKENKPLKEEKIVP 249
>AL512635-1|CAH70705.1| 568|Homo sapiens myeloid/lymphoid or
mixed-lineage leukemia (trithorax homolog, Drosophila);
tra protein.
Length = 568
Score = 33.1 bits (72), Expect = 1.2
Identities = 22/92 (23%), Positives = 40/92 (43%)
Frame = +1
Query: 19 SSDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKT 198
SS S + S + S ++ S++ SST +S+P + + + S+D+R K
Sbjct: 158 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKPHKLMKEHKEKPSKDSREHKSA 217
Query: 199 DSIDLRDPNGLRRRVSRFECETRLVKSHCLEP 294
RD N + S+ E + +K + P
Sbjct: 218 FKEPSRDHNKSSKESSKKPKENKPLKEEKIVP 249
>AL354879-1|CAI14771.1| 568|Homo sapiens myeloid/lymphoid or
mixed-lineage leukemia (trithorax homolog, Drosophila);
tra protein.
Length = 568
Score = 33.1 bits (72), Expect = 1.2
Identities = 22/92 (23%), Positives = 40/92 (43%)
Frame = +1
Query: 19 SSDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKT 198
SS S + S + S ++ S++ SST +S+P + + + S+D+R K
Sbjct: 158 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKPHKLMKEHKEKPSKDSREHKSA 217
Query: 199 DSIDLRDPNGLRRRVSRFECETRLVKSHCLEP 294
RD N + S+ E + +K + P
Sbjct: 218 FKEPSRDHNKSSKESSKKPKENKPLKEEKIVP 249
>BC036089-1|AAH36089.1| 568|Homo sapiens myeloid/lymphoid or
mixed-lineage leukemia (trithorax homolog, Drosophila);
tra protein.
Length = 568
Score = 32.3 bits (70), Expect = 2.1
Identities = 22/92 (23%), Positives = 40/92 (43%)
Frame = +1
Query: 19 SSDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKT 198
SS S + S + S ++ S++ SST +S+P + + + S+D+R K
Sbjct: 158 SSSSSSSSSSSSSSSGSSSSSSSSSSSSSSSSSTSFSKPHKLMKEHKEKPSKDSREHKSA 217
Query: 199 DSIDLRDPNGLRRRVSRFECETRLVKSHCLEP 294
RD N + S+ E + +K + P
Sbjct: 218 FKEPSRDHNKSSKESSKKPKENKPLKEEKIVP 249
>BC006350-1|AAH06350.1| 619|Homo sapiens BUD13 homolog (S.
cerevisiae) protein.
Length = 619
Score = 31.1 bits (67), Expect = 5.0
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +1
Query: 40 AGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSR 174
+G S R +HD+ PS PR+ R S+D S PR PD R
Sbjct: 211 SGASPRRVRHDSPDPSP-PRRARHGSSDISSPRRVHNNSPDTSRR 254
>U41221-1|AAA82080.1| 887|Homo sapiens hMSH2 protein.
Length = 887
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 640 FIATLLFDPSMSALPIIAKQIRQALDCSPIKRERELGLDP 521
F+ FDP++S L I + + + + I R+LGLDP
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDP 507
>U04045-1|AAA61870.1| 934|Homo sapiens hMSH2 protein.
Length = 934
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 640 FIATLLFDPSMSALPIIAKQIRQALDCSPIKRERELGLDP 521
F+ FDP++S L I + + + + I R+LGLDP
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDP 507
>U03911-1|AAA18643.1| 934|Homo sapiens hMSH2 protein.
Length = 934
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 640 FIATLLFDPSMSALPIIAKQIRQALDCSPIKRERELGLDP 521
F+ FDP++S L I + + + + I R+LGLDP
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDP 507
>L47583-1|AAB59564.1| 934|Homo sapiens DNA mismatch repair protein
protein.
Length = 934
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 640 FIATLLFDPSMSALPIIAKQIRQALDCSPIKRERELGLDP 521
F+ FDP++S L I + + + + I R+LGLDP
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDP 507
>L47582-1|AAB59565.1| 934|Homo sapiens DNA mismatch repair protein
protein.
Length = 934
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 640 FIATLLFDPSMSALPIIAKQIRQALDCSPIKRERELGLDP 521
F+ FDP++S L I + + + + I R+LGLDP
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDP 507
>L47581-1|AAA76858.1| 934|Homo sapiens DNA mismatch repair protein
protein.
Length = 934
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 640 FIATLLFDPSMSALPIIAKQIRQALDCSPIKRERELGLDP 521
F+ FDP++S L I + + + + I R+LGLDP
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDP 507
>L47580-1|AAB59572.1| 810|Homo sapiens MSH2 protein.
Length = 810
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 640 FIATLLFDPSMSALPIIAKQIRQALDCSPIKRERELGLDP 521
F+ FDP++S L I + + + + I R+LGLDP
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDP 507
>L47579-1|AAB59571.1| 534|Homo sapiens MSH2 protein.
Length = 534
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 640 FIATLLFDPSMSALPIIAKQIRQALDCSPIKRERELGLDP 521
F+ FDP++S L I + + + + I R+LGLDP
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDP 507
>BC021566-1|AAH21566.1| 934|Homo sapiens mutS homolog 2, colon
cancer, nonpolyposis type 1 (E. coli) protein.
Length = 934
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 640 FIATLLFDPSMSALPIIAKQIRQALDCSPIKRERELGLDP 521
F+ FDP++S L I + + + + I R+LGLDP
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDP 507
>AY601851-1|AAS99351.1| 934|Homo sapiens mutS homolog 2, colon
cancer, nonpolyposis type 1 (E. coli) protein.
Length = 934
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 640 FIATLLFDPSMSALPIIAKQIRQALDCSPIKRERELGLDP 521
F+ FDP++S L I + + + + I R+LGLDP
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDP 507
>AK223284-1|BAD97004.1| 878|Homo sapiens mutS homolog 2 variant
protein.
Length = 878
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 640 FIATLLFDPSMSALPIIAKQIRQALDCSPIKRERELGLDP 521
F+ FDP++S L I + + + + I R+LGLDP
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDP 507
>AK222860-1|BAD96580.1| 878|Homo sapiens mutS homolog 2 variant
protein.
Length = 878
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 640 FIATLLFDPSMSALPIIAKQIRQALDCSPIKRERELGLDP 521
F+ FDP++S L I + + + + I R+LGLDP
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDP 507
>AC079775-2|AAY15096.1| 586|Homo sapiens unknown protein.
Length = 586
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 640 FIATLLFDPSMSALPIIAKQIRQALDCSPIKRERELGLDP 521
F+ FDP++S L I + + + + I R+LGLDP
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDP 507
>BC048251-1|AAH48251.1| 322|Homo sapiens ZDHHC12 protein protein.
Length = 322
Score = 30.3 bits (65), Expect = 8.7
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 367 TPLRPKPA*PNPARICSLWSPESRE 293
TP P P P PA +CS SPE R+
Sbjct: 68 TPTPPTPVLPGPASLCSPASPELRQ 92
>AL441992-6|CAI15406.1| 210|Homo sapiens zinc finger, DHHC-type
containing 12 protein.
Length = 210
Score = 30.3 bits (65), Expect = 8.7
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 367 TPLRPKPA*PNPARICSLWSPESRE 293
TP P P P PA +CS SPE R+
Sbjct: 68 TPTPPTPVLPGPASLCSPASPELRQ 92
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,584,453
Number of Sequences: 237096
Number of extensions: 2923439
Number of successful extensions: 7315
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 6899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7299
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10092110758
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -