Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_O03
         (813 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    28   9.1  
AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protei...    28   9.1  
AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A prot...    28   9.1  

>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -2

Query: 440 FGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRV 261
           FG L H  G       LP   +    S+  + ++++G    +   R+SGGSK+   +   
Sbjct: 212 FGQLTHRGGERERRHSLPRVIIEEVRSRRGSRMSQTGSQSGSPTRRQSGGSKERSPSQPD 271

Query: 260 SH--SKRETRRRSP 225
            H  +K + R RSP
Sbjct: 272 IHIVAKPQQRWRSP 285


>AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protein 1
            protein.
          Length = 1908

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -2

Query: 740  GKPRPIDPLVKRVFSKRGPEKLPQG*LGLWQPSVHSDVAF*SFDVGS-SYHCEANSPSV 567
            G+P P+  L  +V + + P K P+G  G   P +   V   SF +G  SY     S S+
Sbjct: 1201 GEPCPLTALANKVLTCQPPVKKPRG-AGKLNPEIVVTVGNASFSIGEVSYDSPGLSSSL 1258


>AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A protein.
          Length = 1951

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -2

Query: 740  GKPRPIDPLVKRVFSKRGPEKLPQG*LGLWQPSVHSDVAF*SFDVGS-SYHCEANSPSV 567
            G+P P+  L  +V + + P K P+G  G   P +   V   SF +G  SY     S S+
Sbjct: 1207 GEPCPLTALANKVLTCQPPVKKPRG-AGKLNPEIVVTVGNASFSIGEVSYDSPGLSSSL 1264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,311,225
Number of Sequences: 27780
Number of extensions: 423204
Number of successful extensions: 1314
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)