Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_O02
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    64   2e-11
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    63   4e-11
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po...    30   0.45 
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    27   3.2  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   7.3  
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc...    25   9.7  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
 Frame = -3

Query: 753 FQXDQXXIGPFRXXPRCGVXEC*QAEXPEAGSGRSXWTFXHLXQSAFGRLDPYSGHGRHH 574
           F  D   +  FR  P   +    +    +   G     F    +SAFG LD   G     
Sbjct: 211 FNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEA 270

Query: 573 RNQKKNFNLPQPKMANTDLTRXFKXDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKL 400
              KKN+ LP+  ++N D+TR    DEI+ +++A    RV RA  +K NPL N   + +L
Sbjct: 271 AQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARL 330

Query: 399 NPY 391
           NPY
Sbjct: 331 NPY 333



 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/42 (35%), Positives = 17/42 (40%)
 Frame = -1

Query: 755 IFNXIRXXLGLSAXXPGVXFXXXXXXXXXXLAPGGHXGRXVI 630
           +FN     +      PGV            LAPGGH GR VI
Sbjct: 210 VFNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVI 251


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
 Frame = -3

Query: 753 FQXDQXXIGPFRXXPRCGVXEC*QAEXPEAGSGRSXWTFXHLXQSAFGRLDPYSGHGRHH 574
           F  D   +  FR  P   +    +    +   G     F    +SAFG LD   G     
Sbjct: 211 FNEDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEV 270

Query: 573 RNQKKNFNLPQPKMANTDLTRXFKXDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKL 400
              KKN+ LP+  ++N D+TR    DEI+ +++A    RV RA  +K NPL N   + +L
Sbjct: 271 AQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRL 330

Query: 399 NPY 391
           NPY
Sbjct: 331 NPY 333



 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/42 (35%), Positives = 17/42 (40%)
 Frame = -1

Query: 755 IFNXIRXXLGLSAXXPGVXFXXXXXXXXXXLAPGGHXGRXVI 630
           +FN     +      PGV            LAPGGH GR VI
Sbjct: 210 VFNEDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVI 251


>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = -1

Query: 662 APGGHXGRXVI*XSPHSAGLTLIRVMEDTI---ETKRRTSTCPSQRWPTLTS 516
           A  G  G+ +   S H +    IR +E+ +   + KR TS C  + WP L S
Sbjct: 280 AAEGQMGKALAFASTHPSSKKRIRKIEEWLPEAQVKRETSDCYHETWPMLQS 331


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 388 RVRIEFQHRLVIGERVQFACSTDHAFVGS 474
           +V +EF+ RL IG+RV+       AF+GS
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGS 235


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = -3

Query: 573 RNQKKNFNLPQPKMANTDLTRXFKXDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNP 394
           R QK + +  Q K     LT+     E + VL       +R T+K   LTN+  ++K +P
Sbjct: 729 RKQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSP 786


>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 218

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 588 HGRHHRNQKKNFNLPQPKMANTDL 517
           H +HH+    N N  Q K+A+ +L
Sbjct: 51  HDKHHQTYVNNLNAAQEKLADPNL 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,920,292
Number of Sequences: 5004
Number of extensions: 28461
Number of successful extensions: 65
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)