Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_O02
         (812 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                           73   4e-13
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...    69   6e-12
11_01_0205 + 1617044-1617197,1617845-1618233                           30   2.5  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score = 72.5 bits (170), Expect = 4e-13
 Identities = 42/111 (37%), Positives = 56/111 (50%)
 Frame = -3

Query: 723 FRXXPRCGVXEC*QAEXPEAGSGRSXWTFXHLXQSAFGRLDPYSGHGRHHRNQKKNFNLP 544
           FR  P   V    +    +   G     F    +SAF +L+   G       +KK F LP
Sbjct: 226 FRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFILP 285

Query: 543 QPKMANTDLTRXFKXDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 391
           +PKMAN DL R    DE++ V++  NK V R  ++ NPL N  A+LKLNPY
Sbjct: 286 RPKMANADLGRIINSDEVQSVVKPLNKEVKRREKRKNPLKNVAAVLKLNPY 336


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score = 68.5 bits (160), Expect = 6e-12
 Identities = 41/111 (36%), Positives = 54/111 (48%)
 Frame = -3

Query: 723 FRXXPRCGVXEC*QAEXPEAGSGRSXWTFXHLXQSAFGRLDPYSGHGRHHRNQKKNFNLP 544
           FR  P   V    +    +   G     F    + AF +LD   G       +KK F LP
Sbjct: 225 FRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKGFVLP 284

Query: 543 QPKMANTDLTRXFKXDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 391
           +PKMAN DL+R    DE++ V++  NK V     + NPL N  A+LKLNPY
Sbjct: 285 RPKMANADLSRLINSDEVQSVVKPINKEVKLREARRNPLKNVAAVLKLNPY 335


>11_01_0205 + 1617044-1617197,1617845-1618233
          Length = 180

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 397 IEFQHRLVIGERVQFACSTDHAFVGSTEDL 486
           ++  HRLV G+  +F    +H FV S ++L
Sbjct: 35  LQISHRLVAGQNYEFQSGINHGFVNSRKNL 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,592,162
Number of Sequences: 37544
Number of extensions: 228502
Number of successful extensions: 376
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)