Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_O01
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    62   9e-11
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    61   2e-10
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   1.4  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    28   1.4  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    27   3.2  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 62.1 bits (144), Expect = 9e-11
 Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 2/94 (2%)
 Frame = -2

Query: 570 LFGSWKTPSKQKKNFNLPQPKMANTDLTRXFKSDEIRKVLRAPN-KRVIRA-TRKLNPLT 397
           +FGS    ++ KKN+ LP+  ++N D+TR   SDEI+ +++A    RV RA  +K NPL 
Sbjct: 263 VFGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLK 322

Query: 396 NNKAMLKLNPYAAVLKRKAILELRRRKNLKALAD 295
           N   + +LNPYA     KA ++L   K  KA  +
Sbjct: 323 NKAVLARLNPYAKAY--KANVKLNTGKTPKAAGE 354



 Score = 29.1 bits (62), Expect = 0.79
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = -3

Query: 758 IQXXGAPXXXXNKDQGXXXGLPQNXXGGGSXMLTXXTFLXXXPGRSXWTFVIWXQSAFGR 579
           +Q  G P    N+D G      +N  G     +     L   PG     FVIW +SAFG 
Sbjct: 202 VQRRG-PLVVFNEDAGIVKAF-RNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGL 259

Query: 578 XD 573
            D
Sbjct: 260 LD 261


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 2/94 (2%)
 Frame = -2

Query: 570 LFGSWKTPSKQKKNFNLPQPKMANTDLTRXFKSDEIRKVLRAPN-KRVIRA-TRKLNPLT 397
           +FGS    ++ KKN+ LP+  ++N D+TR   SDEI+ +++A    RV RA  +K NPL 
Sbjct: 263 VFGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLK 322

Query: 396 NNKAMLKLNPYAAVLKRKAILELRRRKNLKALAD 295
           N   + +LNPYA     KA +++   K  KA  +
Sbjct: 323 NKAVLSRLNPYAKAY--KANVKINSEKTPKAAGE 354



 Score = 29.1 bits (62), Expect = 0.79
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = -3

Query: 758 IQXXGAPXXXXNKDQGXXXGLPQNXXGGGSXMLTXXTFLXXXPGRSXWTFVIWXQSAFGR 579
           +Q  G P    N+D G      +N  G     +     L   PG     FVIW +SAFG 
Sbjct: 202 VQRRG-PLVVFNEDTGIVKAF-RNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGL 259

Query: 578 XD 573
            D
Sbjct: 260 LD 261


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 27/109 (24%), Positives = 46/109 (42%)
 Frame = -2

Query: 543  KQKKNFNLPQPKMANTDLTRXFKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 364
            KQK + +  Q K     LT+   S E + VL       +R T+K   LTN+  ++K +P 
Sbjct: 730  KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSPT 787

Query: 363  AAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRRK 217
              +  ++   +      +  L   ++    L+KRN   K +      RK
Sbjct: 788  PQITVKQNTTKSSSAPRMGMLEQLKQE--YLTKRNFESKLKSSAVSSRK 834


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
 Frame = -2

Query: 477 KSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKA-- 304
           +S  +  +    +K+ IR  R+L+P    ++  + N Y+ + +  ++   R R       
Sbjct: 659 RSRSVTPINNINHKKYIRKDRELSPRGRERSSNR-NSYSDLSRSSSLSRGRSRSYTPEGR 717

Query: 303 LADAEKSGLKLSKRNPAMKAEKLRERRRKN 214
           L ++E  G +    +PA +  + R+R R++
Sbjct: 718 LIESEDKGYRSRSSSPASRKYRSRQRYRRS 747


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 361 RVRIEFQHRLVIGERVQFACSTDHAFVGS 447
           +V +EF+ RL IG+RV+       AF+GS
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGS 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,298,893
Number of Sequences: 5004
Number of extensions: 39559
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)