Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_O01
         (817 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                           84   1e-16
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...    79   6e-15
11_01_0205 + 1617044-1617197,1617845-1618233                           30   2.5  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   5.8  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 43/99 (43%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
 Frame = -2

Query: 570 LFGSWKTPSKQKKNFNLPQPKMANTDLTRXFKSDEIRKVLRAPNKRVIRATRKLNPLTNN 391
           ++G+++ PS +KK F LP+PKMAN DL R   SDE++ V++  NK V R  ++ NPL N 
Sbjct: 268 VYGTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQSVVKPLNKEVKRREKRKNPLKNV 327

Query: 390 KAMLKLNPYAAVLKRKAIL-ELRRRKNLKALADAEKSGL 277
            A+LKLNPY    ++ A L E  R K  K   D++++ L
Sbjct: 328 AAVLKLNPYFGTARKMATLAEAARIKARKEKLDSKRTKL 366


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score = 78.6 bits (185), Expect = 6e-15
 Identities = 43/112 (38%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
 Frame = -2

Query: 570 LFGSWKTPSKQKKNFNLPQPKMANTDLTRXFKSDEIRKVLRAPNKRVIRATRKLNPLTNN 391
           ++G + TP+ +KK F LP+PKMAN DL+R   SDE++ V++  NK V     + NPL N 
Sbjct: 267 VYGGFDTPALKKKGFVLPRPKMANADLSRLINSDEVQSVVKPINKEVKLREARRNPLKNV 326

Query: 390 KAMLKLNPYAAVLKRKAIL-ELRRRKNLKALADAEKSGLKLSKRNPAMKAEK 238
            A+LKLNPY    ++ A L E  R K      D++++ L   + +    A K
Sbjct: 327 AAVLKLNPYFGTARKMAALAEAARVKARTEKLDSKRTKLSPEESSKIKAAGK 378


>11_01_0205 + 1617044-1617197,1617845-1618233
          Length = 180

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 370 IEFQHRLVIGERVQFACSTDHAFVGSTEDL 459
           ++  HRLV G+  +F    +H FV S ++L
Sbjct: 35  LQISHRLVAGQNYEFQSGINHGFVNSRKNL 64


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/55 (32%), Positives = 20/55 (36%)
 Frame = +2

Query: 629 PXPXSGRSXLLTXRNPPPGXFAEGPNXNPDPCXXIXXGPXXPGYGXXGAPFNPLP 793
           P P          + PPP   A+GP   P P       P  PG G  G P  P P
Sbjct: 329 PPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPG-GKKGGPPPPPP 382


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,196,128
Number of Sequences: 37544
Number of extensions: 355210
Number of successful extensions: 734
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)