Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_O01
         (817 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    63   3e-10
U21320-7|AAA62533.1|  558|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   7.0  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   7.0  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   7.0  
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    28   9.2  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
 Frame = -2

Query: 570 LFGSWKTPSKQ-KKNFNLPQPKMANTDLTRXFKSDEIRKVLRAPNKRVIRATRKLNPLTN 394
           ++G+    S Q KK +++P P MAN+D +R  +S+E+ K +RAP K  +      NPL  
Sbjct: 262 IYGTTVANSSQLKKGWSVPLPIMANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHRNPLKK 321

Query: 393 NKAMLKLNPYAAVLKRKAILELRR 322
              + KLNPYA++L++ +   +++
Sbjct: 322 RTLLYKLNPYASILRKASKANVKK 345


>U21320-7|AAA62533.1|  558|Caenorhabditis elegans Hypothetical
           protein K04G7.1 protein.
          Length = 558

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = -2

Query: 399 TNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 220
           T++ +  K+N       +K  LE+R  +  + + D E SG +LS   P   A  L++RRR
Sbjct: 353 TSSASPQKMNHEQQRYSQKRHLEMRTGRTTRDMRDYESSGRQLSP-TPTTTAGLLKKRRR 411

Query: 219 K 217
           +
Sbjct: 412 E 412


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +2

Query: 674 PPPGXFAEGPNXNPDPCXXIXXGPXXPGY 760
           PPPG F  GP   P P       P  P Y
Sbjct: 775 PPPGGFKGGPPPPPPPGMFAPMAPVIPDY 803


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +2

Query: 674 PPPGXFAEGPNXNPDPCXXIXXGPXXPGY 760
           PPPG F  GP   P P       P  P Y
Sbjct: 775 PPPGGFKGGPPPPPPPGMFAPMAPVIPDY 803


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +2

Query: 674 PPPGXFAEGPNXNPDPCXXIXXGPXXPGY 760
           PPPG F  GP   P P       P  P Y
Sbjct: 358 PPPGGFKGGPPPPPPPGMFAPMAPVIPDY 386


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
 Frame = -2

Query: 543 KQKKNFNLPQPKMANTDLTRXFKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 364
           K+ +NFN+ Q      D+TR  K     K +R   +  I   R   P T N+    L+ +
Sbjct: 138 KRARNFNIGQDIQPKKDVTRFVKWP---KYIRLQRQSAILQKRLKVPPTINQFRTALDSH 194

Query: 363 AAVLKRKAILELR------RRKNLKALADAEKSGLK 274
           +A    K + + R      ++  L+A A+A  +G K
Sbjct: 195 SARQAFKLLDKYRPESSEAKKNRLRARAEARAAGKK 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,150,339
Number of Sequences: 27780
Number of extensions: 266891
Number of successful extensions: 621
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)