Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_N21
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   143   3e-35
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   141   9e-35
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    40   6e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.4  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    27   2.4  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    26   5.5  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    25   9.7  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  143 bits (346), Expect = 3e-35
 Identities = 76/142 (53%), Positives = 90/142 (63%)
 Frame = -3

Query: 780 IXNPVXCX*FXSRPFXSGVLXLKFPANTRXYAYCGDVSHPGVLXXQIQAAFREPRXLIVL 601
           I NP       SRP+    + LKF A+T   A  G  + PG     I   +REPR +IV 
Sbjct: 71  IENPADVCVISSRPYGHRAV-LKFAAHTGATAIAGRFT-PGNFTNYITRTYREPRLIIVT 128

Query: 600 DPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRL 421
           DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLAREVLRL
Sbjct: 129 DPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRL 188

Query: 420 RGALPRDQRWDVVVDLFFYRDP 355
           RG + R   W+V+ DL+FYRDP
Sbjct: 189 RGNISRTTAWEVMPDLYFYRDP 210


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  141 bits (342), Expect = 9e-35
 Identities = 75/142 (52%), Positives = 90/142 (63%)
 Frame = -3

Query: 780 IXNPVXCX*FXSRPFXSGVLXLKFPANTRXYAYCGDVSHPGVLXXQIQAAFREPRXLIVL 601
           I NP       +R +    + LKF A+T   A  G  + PG     I   +REPR ++V 
Sbjct: 70  IENPADVCVVSTRTYGHRAV-LKFAAHTGATAIAGRFT-PGNFTNYITRTYREPRLIVVT 127

Query: 600 DPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRL 421
           DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLAREVLR+
Sbjct: 128 DPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRV 187

Query: 420 RGALPRDQRWDVVVDLFFYRDP 355
           RG L R   WDV+ DL+FYRDP
Sbjct: 188 RGTLSRSAPWDVMPDLYFYRDP 209


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = -3

Query: 621 PRXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 442
           P  +++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239

Query: 441 AR 436
           +R
Sbjct: 240 SR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 573 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 463
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 419 VVRFPVTSAGMLWLICSSTVTPEESEKD 336
           V+ FP TS+G   LI S +  PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = -3

Query: 537 LCNTDSPLRFVD--IAIPCNTKSSHSI-GLMWWLLAREVLRLRGALPRDQRWDV 385
           L   D  ++  D  +A   N    HS+ G  +W+ A EV+ L GA      W V
Sbjct: 138 LTTKDGTIKLADFGVATKINALEDHSVVGSPYWM-APEVIELVGATTASDIWSV 190


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 465 IGLMWWLLAREVLRLRGALPRDQRWD 388
           IGL W L  REV R +    R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,932,644
Number of Sequences: 5004
Number of extensions: 54179
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)