Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_N16
         (810 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0243 + 1889885-1890049,1890158-1890217,1891113-1891226,189...    29   3.3  
01_06_0581 - 30386018-30386440                                         29   4.4  
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026...    28   7.6  

>03_01_0243 +
           1889885-1890049,1890158-1890217,1891113-1891226,
           1897117-1897182,1897272-1897379,1897476-1897559,
           1898042-1898143,1898282-1898395,1898474-1898554,
           1898931-1899050,1899398-1899493
          Length = 369

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 348 HCRRAPPPPLRSLISNLSNTCDLTPLPEWSCEQ 250
           HCR +   P   +  N++   DL  +PEW+ E+
Sbjct: 129 HCRLSLAVPKEGIFENINTLEDLANMPEWTQER 161


>01_06_0581 - 30386018-30386440
          Length = 140

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 272 SGVRSQVLERLEMRLRSGGGGARRQ 346
           SG+  +V +R+E   R GGGG RR+
Sbjct: 31  SGIEVKVRKRVEKEARMGGGGRRRR 55


>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
            18303723-18303836,18303903-18304046,18316147-18316312,
            18316396-18317130,18317219-18317422,18317496-18318177,
            18318272-18318528,18318604-18319298,18319345-18319382,
            18319847-18319928,18320018-18320112,18320443-18320526,
            18320601-18320891,18321521-18321853,18321948-18322150,
            18322243-18322399,18322482-18322585,18322675-18322835,
            18323511-18323824,18324317-18324589,18324666-18324967,
            18325459-18325549,18326140-18326190,18326700-18326768,
            18326926-18327017,18327082-18327148,18328582-18328746,
            18329027-18329103,18329572-18329766,18330208-18330275,
            18331081-18331172,18331399-18331522,18331608-18331705,
            18332384-18332997,18333620-18333626
          Length = 2892

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 239  HHALCSHDHSGSGVRSQVLERLEMRLRSGGGGARRQCCT 355
            H A C+ D  G GVR + +     RLR+G  G+R   CT
Sbjct: 1373 HEAHCAQDRRGDGVRPRQIR----RLRAGEAGSR--ACT 1405


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,749,234
Number of Sequences: 37544
Number of extensions: 242516
Number of successful extensions: 988
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)