Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_N14
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    28   1.9  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    27   3.3  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    26   5.7  
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    26   7.5  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   10.0 

>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 259 LGAIWGVALNHCALTYTP 206
           +G   GV+LNHCA  YTP
Sbjct: 165 IGFPTGVSLNHCAAHYTP 182


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 17/83 (20%), Positives = 34/83 (40%)
 Frame = -3

Query: 585 DLSXRRCSPLTLGHPPVAPEPPRKPFKLFRPYLLEDEDEKRPSIASLPVSNTGYVSAFVP 406
           +L  +  + +T   PP  P  P  P ++      E+     P+I++  + N  +    +P
Sbjct: 170 ELEEQLLNSMTAPKPPSQPAIPIVPSEMAAQVTRENISSLDPAISAASIGNVTFGQPNIP 229

Query: 405 VQSAAGCALTACSAPHWCAAMPS 337
             +     L A +  H   A+P+
Sbjct: 230 STTTDFAGLAAPNMVHPSQAIPN 252


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
 Frame = -3

Query: 492 YLLEDEDEKRPSIASL----PVSNTGYVSAFVPVQSAAGCALTACSAPHWCAAMPSYSAP 325
           +LL+DE+     I ++    PV     +++  P +S +  ALTA   PH    +     P
Sbjct: 205 FLLKDENTDTDVITNIDQVYPVGVFAQITSIFPAKSGSEPALTAVLYPHRRIRITELIPP 264

Query: 324 LR*EDAEGAELRIYCDLAAD 265
              EDA+ A      +L  D
Sbjct: 265 K--EDADSAASSDAAELETD 282


>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 354 TNEEQNTRSRRNPLHFVLAQTQKHILYSKLAMKRLMVASHL 476
           T EE +T    +PL  V+       L   ++ KR+MV SH+
Sbjct: 177 TKEEDSTDPEEDPLLHVINHGASIHLAKFVSKKRVMVLSHM 217


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/57 (26%), Positives = 31/57 (54%)
 Frame = -3

Query: 543 PPVAPEPPRKPFKLFRPYLLEDEDEKRPSIASLPVSNTGYVSAFVPVQSAAGCALTA 373
           PP  P+  + P    +  +++   + +PS+ +  V+    +++ VPVQ+AA  + TA
Sbjct: 744 PPHLPQA-QLPSATGQSGVVQQPYQTQPSVTNNNVATQPVIASTVPVQTAAPSSQTA 799


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,764
Number of Sequences: 5004
Number of extensions: 56244
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)