Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_N14
         (830 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-26...    29   3.4  
12_02_0063 + 13098519-13099585,13099759-13099906                       29   4.5  
12_02_0493 - 19677481-19677776,19678953-19679017,19679455-196795...    28   7.9  
06_01_0842 + 6383033-6383430,6383548-6383627,6383974-6384085,638...    28   7.9  
01_05_0490 + 22672241-22674679                                         28   7.9  

>08_01_0036 -
           267236-268165,268255-268299,268485-268574,269485-269805,
           269895-270098,271532-271664,271810-271881,273106-273168,
           273252-275034,275169-275217
          Length = 1229

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -3

Query: 555 TLGHPPVAPEPPRKPFKLFRPYLL---EDEDEKRPSIASLPVSNTGYV 421
           T G PP  PE  RKP K     LL   ED + K   IA+  +  T YV
Sbjct: 435 TFGWPPGRPEDERKPGKALFFLLLSYEEDSEGKLQLIATKVLEGTHYV 482


>12_02_0063 + 13098519-13099585,13099759-13099906
          Length = 404

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = -3

Query: 540 PVAPEPPRKPFKLFRPYLLEDE--DEKRPS--IASLPVSNTGYVSAFVPVQSAAGCALTA 373
           P AP PPR+      P + + +   +KRP+  +A  P +      A      A   ++TA
Sbjct: 193 PQAPAPPRQV-----PVITQQQAPPQKRPAAPVAEPPCATKKMKGAVSAKPMAPQSSVTA 247

Query: 372 CSAPHWCAAMPSYSAP 325
            +AP  CA  PS   P
Sbjct: 248 SAAPPRCAVAPSQHHP 263


>12_02_0493 -
           19677481-19677776,19678953-19679017,19679455-19679594,
           19680723-19680801,19683476-19683675
          Length = 259

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 445 ASFEYRICFCVCAS-TKCSGLRLDRVFCSSLVCSYAL 338
           ASFE RIC C CA+     G  +  +  + ++C   L
Sbjct: 101 ASFETRICLCGCANQPDLEGPEVPNIITTGVLCQIIL 137


>06_01_0842 +
           6383033-6383430,6383548-6383627,6383974-6384085,
           6384355-6384454,6384682-6384744,6385857-6386011,
           6386109-6386286,6386787-6386954
          Length = 417

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -3

Query: 495 PYLLEDEDEKRPSIASLPVSNTGYVSAFVPVQ--SAAGCA 382
           P+ L+DED   P +AS P+   G      PV+  + AGC+
Sbjct: 356 PFPLDDEDTMGPMLASSPLLMPGIHDQQPPVEDMATAGCS 395


>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 561 PLTLGHPPVAPEPPRKPFKLFRPYLLEDEDEKRPSIASLP 442
           PL    PP+ P PP  P     P + E E+E  PS+ + P
Sbjct: 688 PLPPPSPPLPPPPPPPP-----PPMSEGEEEAPPSVTASP 722


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,959,158
Number of Sequences: 37544
Number of extensions: 407377
Number of successful extensions: 1297
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)