Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_N12
         (807 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC032109-1|AAH32109.1|  859|Homo sapiens low density lipoprotein...    31   6.5  
AF166350-1|AAD44360.1|  859|Homo sapiens ST7 protein protein.          31   6.5  
AB208957-1|BAD92194.1|  793|Homo sapiens suppression of tumorige...    31   6.5  
BC008880-1|AAH08880.1|  275|Homo sapiens exosome component 3 pro...    30   8.6  
BC002437-1|AAH02437.1|  275|Homo sapiens exosome component 3 pro...    30   8.6  
AL138752-7|CAI13880.1|  275|Homo sapiens exosome component 3 pro...    30   8.6  
AF281132-1|AAF82133.1|  275|Homo sapiens exosome component Rrp40...    30   8.6  

>BC032109-1|AAH32109.1|  859|Homo sapiens low density
           lipoprotein-related protein 12 protein.
          Length = 859

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 713 CLIKQKHCDGPRGCXRNVISAQCSECQREEIQAS 612
           C  +Q+ CDG   C        C+ CQ+EE   S
Sbjct: 388 CYTEQQRCDGYWHCPNGRDETNCTMCQKEEFPCS 421


>AF166350-1|AAD44360.1|  859|Homo sapiens ST7 protein protein.
          Length = 859

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 713 CLIKQKHCDGPRGCXRNVISAQCSECQREEIQAS 612
           C  +Q+ CDG   C        C+ CQ+EE   S
Sbjct: 388 CYTEQQRCDGYWHCPNGRDETNCTMCQKEEFPCS 421


>AB208957-1|BAD92194.1|  793|Homo sapiens suppression of
           tumorigenicity variant protein.
          Length = 793

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 713 CLIKQKHCDGPRGCXRNVISAQCSECQREEIQAS 612
           C  +Q+ CDG   C        C+ CQ+EE   S
Sbjct: 322 CYTEQQRCDGYWHCPNGRDETNCTMCQKEEFPCS 355


>BC008880-1|AAH08880.1|  275|Homo sapiens exosome component 3
           protein.
          Length = 275

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = -2

Query: 752 TVSSELARPRESDCLIKQKHCDGPRGCXRNVISAQCSECQREEIQASAGKRR 597
           TV  ++  P E   L +Q+  +GP G     +S     C R  +    G RR
Sbjct: 22  TVLGQVVLPGEELLLPEQEDAEGPGGAVERPLSLNARACSRVRVVCGPGLRR 73


>BC002437-1|AAH02437.1|  275|Homo sapiens exosome component 3
           protein.
          Length = 275

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = -2

Query: 752 TVSSELARPRESDCLIKQKHCDGPRGCXRNVISAQCSECQREEIQASAGKRR 597
           TV  ++  P E   L +Q+  +GP G     +S     C R  +    G RR
Sbjct: 22  TVLGQVVLPGEELLLPEQEDAEGPGGAVERPLSLNARACSRVRVVCGPGLRR 73


>AL138752-7|CAI13880.1|  275|Homo sapiens exosome component 3
           protein.
          Length = 275

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = -2

Query: 752 TVSSELARPRESDCLIKQKHCDGPRGCXRNVISAQCSECQREEIQASAGKRR 597
           TV  ++  P E   L +Q+  +GP G     +S     C R  +    G RR
Sbjct: 22  TVLGQVVLPGEELLLPEQEDAEGPGGAVERPLSLNARACSRVRVVCGPGLRR 73


>AF281132-1|AAF82133.1|  275|Homo sapiens exosome component Rrp40
           protein.
          Length = 275

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = -2

Query: 752 TVSSELARPRESDCLIKQKHCDGPRGCXRNVISAQCSECQREEIQASAGKRR 597
           TV  ++  P E   L +Q+  +GP G     +S     C R  +    G RR
Sbjct: 22  TVLGQVVLPGEELLLPEQEDAEGPGGAVERPLSLNARACSRVRVVCGPGLRR 73


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,811,966
Number of Sequences: 237096
Number of extensions: 2689308
Number of successful extensions: 10138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10135
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9980595722
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)