Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_N12
         (807 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00035-3|AAA50645.1|  548|Caenorhabditis elegans Egg sterile (un...    29   5.2  
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related...    28   6.8  
AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    28   6.8  
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass...    28   9.0  

>U00035-3|AAA50645.1|  548|Caenorhabditis elegans Egg sterile
           (unfertilizable) protein2 protein.
          Length = 548

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = -2

Query: 764 DXRSTVSSELARPRESDCLIKQKHCDGPRGCXRNVISAQC-SECQREEIQA 615
           D ++   SE A   +  C+++ + CDG   C   +    C   C  E   +
Sbjct: 288 DCKTCSGSEKALCEDGTCIMRSQVCDGKHDCLDGIDEENCPGSCSNERFSS 338



 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/50 (26%), Positives = 20/50 (40%)
 Frame = -2

Query: 749 VSSELARPRESDCLIKQKHCDGPRGCXRNVISAQCSECQREEIQASAGKR 600
           V S +    ++ CL   + CDG   C        C +C     + SA K+
Sbjct: 419 VESSIQFTCDNKCLESSRRCDGVWDCEDKSDEKGCDKCPSRSFKCSADKK 468


>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
           see also lmb-protein 2 protein.
          Length = 1535

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 731 RPRESDCLIKQKHCDGPRGCXRNVISAQCSEC 636
           RP     L++    DG   C  NVI  QC +C
Sbjct: 884 RPNNDYTLLECNQQDGQCDCLPNVIGIQCDQC 915


>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = +3

Query: 258 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCY 392
           +GT+ +   DIID   +P N +S++ +  +++  R  ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328


>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 162 protein.
          Length = 2643

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 713  CLIKQKHCDGPRGCXRNVISAQCSECQREE 624
            C+ KQ  CDG   C  N     C+E + +E
Sbjct: 1194 CISKQLECDGVDDCGDNSDEKHCTEIRLDE 1223


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,074,845
Number of Sequences: 27780
Number of extensions: 387763
Number of successful extensions: 1077
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)