Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_N11
(813 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 31 0.19
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 29 0.59
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc... 29 1.0
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 28 1.8
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 26 5.5
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 7.3
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 26 7.3
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 26 7.3
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 26 7.3
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 25 9.7
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 31.1 bits (67), Expect = 0.19
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -3
Query: 163 RFPFQLVTPERTYCLAATTHEDRDCWLAVLQQTIKRSLTPQ-DSTKVNREKKKKK 2
+F F+++TP+ AT+ + W+ +Q +I S+ + T +N E+ K
Sbjct: 580 KFCFEVITPQTKRTYQATSKAEMHSWIEAIQYSISESIVQKGKGTSMNSEETSVK 634
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 29.5 bits (63), Expect = 0.59
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 163 RFPFQLVTPERTYCLAATTHEDRDCWLAVLQQTIKRS 53
RF F++VTP+ AT+ E+ D W+ + + K S
Sbjct: 598 RFCFEVVTPKLKRLYQATSAEEMDSWIEAICEAAKIS 634
>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 488
Score = 28.7 bits (61), Expect = 1.0
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Frame = -3
Query: 289 NRKLMYHDEPLDAYPKGEIFVGNESNGYCIRVSNTGNGCKEARF-----PFQ-LVTPERT 128
N + H L +P G +FV NG +R T +G + +F P + L E
Sbjct: 329 NITVAQHITSLAVHPDGNLFVAGLENGE-LRFFETSSGNELTKFGPHSSPVKTLQFGENG 387
Query: 127 YCLAATTHEDRDCWLAVLQQT 65
Y L TT++D D ++ L+++
Sbjct: 388 YWLVVTTNDDSDIFIWDLRKS 408
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -3
Query: 271 HDEPLDAYPKGEIFVGNESNGYCIRVSNTGNGCKE 167
H+ P G ++ ++++GY + S+ NG KE
Sbjct: 362 HNIPCTCMISGRCYITSQNHGYAVDASSLSNGWKE 396
>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 5.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 613 PKGVLKLSELNVAFAPPKIGHMNSMQLTFMKDGTTR 506
P GVL + L +F P GH+NSM + K T R
Sbjct: 601 PAGVL-IFRLQESFTYPNAGHVNSMLTSKAKTVTRR 635
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.8 bits (54), Expect = 7.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 619 RNPKGVLKLSELNVAFAPPKIGH 551
+ PK L L+ + FAPPK+ H
Sbjct: 1918 KKPKSKLALAAMAHGFAPPKVEH 1940
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 677 ENSYSVKPKTRSSITLERTKEPEGRSQIVRV 585
ENSY+ PK + S+ +R K P S +V
Sbjct: 123 ENSYAETPKKKHSLIRKRRKSPLDSSSAQKV 153
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = -2
Query: 662 VKPKTRSSITLERTKEPEGRSQIVRVECCFRATKNRPHELNAVDI 528
++ + S + E E R Q RV CC + H L +DI
Sbjct: 117 IRDQHSSYLRRELNSHREKRLQDTRVHCCLFFIRPTGHSLRPIDI 161
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 364 RNLLVGDE*DPTPESTETQLEVDGVV 441
RNLL+ ++ PTP++T T + GV+
Sbjct: 17 RNLLLQEKGFPTPKATSTGTTIVGVI 42
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/29 (27%), Positives = 21/29 (72%)
Frame = -2
Query: 683 NSENSYSVKPKTRSSITLERTKEPEGRSQ 597
++ NSY+++ +R+ + +T++PE +S+
Sbjct: 447 SNTNSYAIEETSRALMGTSKTRKPENKSK 475
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,180,338
Number of Sequences: 5004
Number of extensions: 65382
Number of successful extensions: 168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -