Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_N11
(813 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0038 - 21769936-21770199,21770785-21771198,21771274-217714... 40 0.003
01_06_1395 + 37010446-37010895 38 0.013
06_01_1178 + 10131844-10131993,10132103-10132171,10132446-101324... 29 4.4
09_02_0204 - 5768596-5768793,5769857-5770006,5770407-5770583 29 5.8
05_03_0275 - 11379934-11380031,11381619-11381946 29 5.8
11_05_0069 - 18814789-18815326,18815742-18816001,18816077-188166... 28 7.7
03_02_0415 - 8263459-8263611,8263788-8263919,8264841-8264936,826... 28 7.7
>05_05_0038 -
21769936-21770199,21770785-21771198,21771274-21771434,
21771544-21771607,21771682-21771864,21772355-21772520,
21773397-21773528,21775085-21775599
Length = 632
Score = 39.5 bits (88), Expect = 0.003
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Frame = -3
Query: 361 REGWLWKTGPRPTDAHRRRWFTLDNRKLMYHDEPLDAYPKGEIFVGNESNGYCIRVSNTG 182
R GWL K G RRRWF L +L + + A +G + G C+ V
Sbjct: 40 RTGWLNKQGEY-IKTWRRRWFVLKQGRLFWFKDA--AVTRGSVPRGVIPVATCLTVKGAE 96
Query: 181 NGCKEARFPFQLVTPERTYCLAATTHEDRDCWL-AVLQQTIKRSLTPQDSTKVNREKK 11
+ +F F+L TP T A + ++++ W+ ++ + ++ S + D+ V+ + +
Sbjct: 97 DVINR-QFAFELSTPTDTMYFIADSEKEKEEWINSIGRSIVQHSRSVTDAEVVDYDSR 153
>01_06_1395 + 37010446-37010895
Length = 149
Score = 37.5 bits (83), Expect = 0.013
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Frame = -3
Query: 361 REGWLWKTGPRPTDAHRRRWFTLDNRKLMYHDE---PLDAYPKGEIFVGNESNGYCIRVS 191
R GWL K G RRRWF L +L + + + P+G I V C+ V
Sbjct: 24 RAGWLTKQGEY-IKTWRRRWFVLKQGRLFWFKDSGVTRASVPRGVIPVAT-----CLTVK 77
Query: 190 NTGNGCKEARFPFQLVTPERTYCLAATTHEDRDCWLAVLQQTI 62
+ +F F+L TP T A + ++++ W+ + ++I
Sbjct: 78 GAEDTLNR-QFAFELSTPAETMYFIADSEKEKEEWINSIGRSI 119
>06_01_1178 +
10131844-10131993,10132103-10132171,10132446-10132451,
10132571-10132930,10133983-10134201,10134905-10135054
Length = 317
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Frame = -2
Query: 719 PYETGXRRTADTNSENSYSV---------KPKTRSSITLERTKEPEGRSQIVRVECCFRA 567
P ETG + TAD+N EN KPK + I L R + E + ++ E ++
Sbjct: 96 PGETGKKSTADSNGENGAVAPVGLLGGENKPKDKDEIVLLREQIEELQKTLLEKEEALKS 155
Query: 566 TKNRPHELNAV 534
++ E+N +
Sbjct: 156 AESLVGEMNTL 166
>09_02_0204 - 5768596-5768793,5769857-5770006,5770407-5770583
Length = 174
Score = 28.7 bits (61), Expect = 5.8
Identities = 23/80 (28%), Positives = 37/80 (46%)
Frame = -1
Query: 369 ISHVKAGCGRLDPDLLTLTEDAGSPSIIGNSCTTTSRLMLIPRARFLSVTNQTATALEFR 190
I ++ CG + PDL T T+D + G+ TT + I R L V+ R
Sbjct: 75 IENILDKCGVIAPDLPTKTDDLSHST--GHGWTTREKENSIRHYRRLHVSMVLHQDRLRR 132
Query: 189 IRAMAARRRGSLSSW*LQKE 130
+R M+ R R L ++ + +E
Sbjct: 133 VRQMSTRLRRRLYAFLITRE 152
>05_03_0275 - 11379934-11380031,11381619-11381946
Length = 141
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = -2
Query: 731 HAGLPYETGXRRTADT---NSENSYSVKPKTRSSI 636
+ G PYE R+T+D N E+ Y +K K+R S+
Sbjct: 106 NVGAPYEYTGRKTSDITSWNLESEYELKKKSRRSL 140
>11_05_0069 -
18814789-18815326,18815742-18816001,18816077-18816631,
18816907-18817062
Length = 502
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 427 VDGVVHNVSLCTSCLLLQAPRDKH 498
V+GVV V C +CLL + PR H
Sbjct: 190 VNGVVVKVKYCHTCLLYRPPRCSH 213
>03_02_0415 -
8263459-8263611,8263788-8263919,8264841-8264936,
8265021-8265137,8265352-8265435,8265517-8265577,
8266217-8266266,8266544-8266633,8267539-8267757,
8269207-8269262,8269469-8269546,8269707-8269811,
8269925-8270069,8270310-8270388,8270470-8270537,
8271550-8271626,8272676-8272712,8273107-8273232,
8273770-8273805
Length = 602
Score = 28.3 bits (60), Expect = 7.7
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Frame = -3
Query: 313 RRRWFTLDNRKLMYHDEPLDAYPKGEIFVGNESNGYCIRVSNTGN-GCKEARFPFQLVTP 137
++RWF L L++ +A P+G + I ++N+G+ KE + ++ P
Sbjct: 74 KKRWFILTRASLVFFRSDPNAPPRGNEPIVTLGG---IDLNNSGSVVVKEDKKLLTVLFP 130
Query: 136 E----RTYCLAATTHEDRDCWLAVLQQTIKRS 53
+ RT+ L A T E+ + W + L+ + ++
Sbjct: 131 DGRDGRTFTLKAETTEELNEWRSALENALAQA 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,530,586
Number of Sequences: 37544
Number of extensions: 469431
Number of successful extensions: 1232
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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