Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_N11
(813 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023828-18|CAA19462.2| 742|Caenorhabditis elegans Hypothetical... 43 2e-04
AL023828-17|CAA19463.2| 826|Caenorhabditis elegans Hypothetical... 43 2e-04
AJ132699-1|CAA10735.1| 742|Caenorhabditis elegans centaurin bet... 43 2e-04
AJ132698-1|CAA10734.1| 826|Caenorhabditis elegans centaurin bet... 43 2e-04
L15314-3|AAF99986.2| 393|Caenorhabditis elegans Gtp exchange fa... 40 0.003
AJ236896-1|CAB38534.1| 377|Caenorhabditis elegans GRP1 protein ... 40 0.003
Z78417-10|CAB01688.2| 745|Caenorhabditis elegans Hypothetical p... 28 6.9
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 28 9.1
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 28 9.1
>AL023828-18|CAA19462.2| 742|Caenorhabditis elegans Hypothetical
protein Y17G7B.15b protein.
Length = 742
Score = 43.2 bits (97), Expect = 2e-04
Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 4/127 (3%)
Frame = -3
Query: 370 DFAREGWLWKTGPRPTDAHRRRWFTLDNRKLMYHDEPLDAYPKGEIFVGNESNGYCIRVS 191
D EG+L+K RRWF + +++L+Y D P + E+ C+
Sbjct: 191 DVMMEGYLYKRSSNAFKTWNRRWFQIKDKQLLYSHRSTDLEP---ATIMEENLRICLVRP 247
Query: 190 NTGN----GCKEARFPFQLVTPERTYCLAATTHEDRDCWLAVLQQTIKRSLTPQDSTKVN 23
N GC F+LVTP R + L A + W+ LQ+TI +L DS V
Sbjct: 248 APSNIDRIGC------FELVTPTRIHLLQADSESLCQDWMRALQRTI-LALHEGDSVDVA 300
Query: 22 REKKKKK 2
+ K
Sbjct: 301 STSPRNK 307
>AL023828-17|CAA19463.2| 826|Caenorhabditis elegans Hypothetical
protein Y17G7B.15a protein.
Length = 826
Score = 43.2 bits (97), Expect = 2e-04
Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 4/127 (3%)
Frame = -3
Query: 370 DFAREGWLWKTGPRPTDAHRRRWFTLDNRKLMYHDEPLDAYPKGEIFVGNESNGYCIRVS 191
D EG+L+K RRWF + +++L+Y D P + E+ C+
Sbjct: 275 DVMMEGYLYKRSSNAFKTWNRRWFQIKDKQLLYSHRSTDLEP---ATIMEENLRICLVRP 331
Query: 190 NTGN----GCKEARFPFQLVTPERTYCLAATTHEDRDCWLAVLQQTIKRSLTPQDSTKVN 23
N GC F+LVTP R + L A + W+ LQ+TI +L DS V
Sbjct: 332 APSNIDRIGC------FELVTPTRIHLLQADSESLCQDWMRALQRTI-LALHEGDSVDVA 384
Query: 22 REKKKKK 2
+ K
Sbjct: 385 STSPRNK 391
>AJ132699-1|CAA10735.1| 742|Caenorhabditis elegans centaurin beta
1B protein.
Length = 742
Score = 43.2 bits (97), Expect = 2e-04
Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 4/127 (3%)
Frame = -3
Query: 370 DFAREGWLWKTGPRPTDAHRRRWFTLDNRKLMYHDEPLDAYPKGEIFVGNESNGYCIRVS 191
D EG+L+K RRWF + +++L+Y D P + E+ C+
Sbjct: 191 DVMMEGYLYKRSSNAFKTWNRRWFQIKDKQLLYSHRSTDLEP---ATIMEENLRICLVRP 247
Query: 190 NTGN----GCKEARFPFQLVTPERTYCLAATTHEDRDCWLAVLQQTIKRSLTPQDSTKVN 23
N GC F+LVTP R + L A + W+ LQ+TI +L DS V
Sbjct: 248 APSNIDRIGC------FELVTPTRIHLLQADSESLCQDWMRALQRTI-LALHEGDSVDVA 300
Query: 22 REKKKKK 2
+ K
Sbjct: 301 STSPRNK 307
>AJ132698-1|CAA10734.1| 826|Caenorhabditis elegans centaurin beta
1A protein.
Length = 826
Score = 43.2 bits (97), Expect = 2e-04
Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 4/127 (3%)
Frame = -3
Query: 370 DFAREGWLWKTGPRPTDAHRRRWFTLDNRKLMYHDEPLDAYPKGEIFVGNESNGYCIRVS 191
D EG+L+K RRWF + +++L+Y D P + E+ C+
Sbjct: 275 DVMMEGYLYKRSSNAFKTWNRRWFQIKDKQLLYSHRSTDLEP---ATIMEENLRICLVRP 331
Query: 190 NTGN----GCKEARFPFQLVTPERTYCLAATTHEDRDCWLAVLQQTIKRSLTPQDSTKVN 23
N GC F+LVTP R + L A + W+ LQ+TI +L DS V
Sbjct: 332 APSNIDRIGC------FELVTPTRIHLLQADSESLCQDWMRALQRTI-LALHEGDSVDVA 384
Query: 22 REKKKKK 2
+ K
Sbjct: 385 STSPRNK 391
>L15314-3|AAF99986.2| 393|Caenorhabditis elegans Gtp exchange
factor for arfs protein1 protein.
Length = 393
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = -3
Query: 361 REGWLWKTGPRPTDAH----RRRWFTLDNRKLMYHDEPLDAYPKGEIFVGN 221
REGWL+K P + ++RWF L L Y D+ D PKG I + N
Sbjct: 264 REGWLFKQSSNPLFSGALSWKKRWFVLSENCLYYFDQMTDKEPKGIITLAN 314
>AJ236896-1|CAB38534.1| 377|Caenorhabditis elegans GRP1 protein
protein.
Length = 377
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = -3
Query: 361 REGWLWKTGPRPTDAH----RRRWFTLDNRKLMYHDEPLDAYPKGEIFVGN 221
REGWL+K P + ++RWF L L Y D+ D PKG I + N
Sbjct: 248 REGWLFKQSSNPLFSGALSWKKRWFVLSENCLYYFDQMTDKEPKGIITLAN 298
>Z78417-10|CAB01688.2| 745|Caenorhabditis elegans Hypothetical
protein C35C5.2 protein.
Length = 745
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -3
Query: 508 RHIYVYHEEPEVISNWYTAIRCAQLHLLQVAFPSTPESDLIHRLPRDFARE 356
RH+ ++H P+ NWY +Q+H L ++ +S + +L R A+E
Sbjct: 678 RHV-LFHPSPD---NWYDGDAISQVHDLISKISNSTDSKELGKLSRQLAKE 724
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 764 VIPNVSHIXRKHAGLPYETGXRRTADTNSENSYSVKPKTR 645
+ N +H R H GLP+ + D SVKPKTR
Sbjct: 6 IFTNFAH--RAHDGLPFNSANPSNKDPIFTMPISVKPKTR 43
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 764 VIPNVSHIXRKHAGLPYETGXRRTADTNSENSYSVKPKTR 645
+ N +H R H GLP+ + D SVKPKTR
Sbjct: 6 IFTNFAH--RAHDGLPFNSANPSNKDPIFTMPISVKPKTR 43
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,915,138
Number of Sequences: 27780
Number of extensions: 386530
Number of successful extensions: 951
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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