Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_N10
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    28   1.7  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    27   2.2  
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch...    27   3.9  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   5.1  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    26   6.7  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   8.9  

>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 23/73 (31%), Positives = 38/73 (52%)
 Frame = -2

Query: 408 TDVEAARPNEDSSEKVKIVSVKGPNLDANVTKALQEQVKEFERAMKEAQRRDQGIVNDEG 229
           ++ EA R    SS + K + +K      N   +LQEQ  EF+R +KE +        ++ 
Sbjct: 463 SESEAERKRLFSSAQEKQLQMKET---VNKLTSLQEQNNEFDRQLKEQE--------EDL 511

Query: 228 SNEIEELTDVKDL 190
            N+ EELT+++ L
Sbjct: 512 QNKEEELTELRKL 524


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = -2

Query: 357 IVSVKGPNLDANVTKALQEQVKEFERAMKEAQRRDQGIVNDEGSNEIE 214
           + S+KGP L A + K +Q  V+       + +  D+ + +D+G++  +
Sbjct: 226 VPSIKGPVLHAIIDKIIQIDVEIQVEVDDDDEEEDEVVTDDDGTSNAD 273


>SPBC16D10.01c ||SPBC418.03c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 297 VKEFERAMKEAQRRDQGIVNDEGSNEIEELTDVKDLRSNKKK 172
           VK+   A KEA  R + + ND+G  +   L  + D  S   K
Sbjct: 55  VKKARSAFKEAVSRSKNLTNDQGYEKYLWLAQINDNGSKALK 96


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = +2

Query: 266  ASFIARSNSFTCS*SAFVTFASKLGPFTLTILTFSLESSLGLAASTS 406
            +S ++  +S+  S SAF + +S+      ++ + SL SS+G+ +S S
Sbjct: 3625 SSVLSELSSYDLSTSAFSSSSSEPSTLDYSVSSSSLSSSIGVGSSFS 3671


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/55 (25%), Positives = 29/55 (52%)
 Frame = -2

Query: 375 SSEKVKIVSVKGPNLDANVTKALQEQVKEFERAMKEAQRRDQGIVNDEGSNEIEE 211
           SSE+  + S+       +  +  +E++KE E   +E +  ++ + N E  NE+E+
Sbjct: 330 SSEEEAVKSLPETQRTTSRIETQEEEIKEEEMEGEEEEEEEE-VPNYESENELED 383


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
            complex subunit Tpr1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1039

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -2

Query: 309  LQEQVKEFERAMKEAQRRDQGIVNDEGSNEIEELTDVKDLRSNKKKGK 166
            +QE+V E+ ++ ++A   D  + +DE     ++    KD +  K K K
Sbjct: 910  MQEEVLEWRKSQQKASEDDMSLSDDEEKQSGKK--KKKDRKKRKSKSK 955


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,486,001
Number of Sequences: 5004
Number of extensions: 15394
Number of successful extensions: 69
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)