Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_N10
(763 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0582 - 15738503-15739301,15739385-15739642,15740585-157406... 31 1.0
02_03_0387 - 18412064-18412144,18412280-18412361,18412922-184131... 30 1.7
01_01_0960 + 7546081-7546161,7546439-7546537,7546650-7546706,754... 30 1.7
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 30 2.3
10_05_0090 - 9071438-9072346,9072497-9072535 29 4.0
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 29 4.0
04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785... 29 4.0
11_01_0319 - 2396835-2396951,2397035-2397105,2397219-2397297,239... 29 5.3
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 28 7.1
>05_03_0582 -
15738503-15739301,15739385-15739642,15740585-15740670,
15740879-15740960,15741044-15741213,15742081-15742194,
15742984-15743082,15743171-15743249,15744604-15744710
Length = 597
Score = 31.1 bits (67), Expect = 1.0
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = -2
Query: 387 PNEDSSEKVKIVSVKGPNLDANVTKALQEQVKEFERAMKEAQRRDQGIVNDEGSNEIEEL 208
P SS + + GP+L ++ + + V+ +K D+G VNDE E+
Sbjct: 171 PVNSSSRFDEAMPSNGPSLSSSEMERMLGAVELLSEMLKAVNPHDRGAVNDEIITEL--- 227
Query: 207 TDVKDLRSNKKK 172
VK RS++KK
Sbjct: 228 --VKQCRSDQKK 237
>02_03_0387 -
18412064-18412144,18412280-18412361,18412922-18413142,
18413387-18413745,18413834-18414443,18414546-18414605,
18414685-18414751,18414843-18414936,18415012-18415125,
18415242-18415308,18415386-18415551,18416587-18417080
Length = 804
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = -2
Query: 306 QEQVKEFERAMKEAQRRDQGIVNDEGSNEIEELTDVKDLRSNKKKG--K*RETNKEKGW* 133
+E+ KE + + RD+G D G E ++ + KD K +G K +E ++K +
Sbjct: 59 KEKEKERDSERGRGRDRDRGKDRDRGEAERDKERERKDRDKEKSRGRDKSKEEREDKDYR 118
Query: 132 DQSR 121
D+SR
Sbjct: 119 DKSR 122
>01_01_0960 +
7546081-7546161,7546439-7546537,7546650-7546706,
7547106-7547261,7547350-7547434,7547572-7547662,
7547776-7547940,7548025-7548144,7548243-7548315,
7548397-7548562,7548647-7549290,7550080-7550258,
7550346-7550469
Length = 679
Score = 30.3 bits (65), Expect = 1.7
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Frame = -2
Query: 225 NEIEELTDVKDLRSNKK------KGK*RETNKEKGW*DQSRFCREGKLGA*EXRRKIRMH 64
NE+EE+ ++KDL+ K +G E + W + + R+ L E +KI H
Sbjct: 604 NELEEMFNIKDLKQKWKVAFTDDEGDTMEVGDDP-WLEFCQMVRKIVLYPIEDEKKIEPH 662
Query: 63 QLLMSLVIPGQNQK 22
L+S P Q+QK
Sbjct: 663 PKLLSSANPEQDQK 676
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 29.9 bits (64), Expect = 2.3
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = -2
Query: 405 DVEAARPNEDSSEKVKIVSVKGPNLDANVTKALQEQVKEFERAMKEAQRRDQGIVNDEGS 226
D+EA R + S KVK +KG N K ++ + R + +R++ +N +
Sbjct: 877 DIEAHREKLEDSFKVKRERLKGFN---RYVKEFHKRKERIHREKLDRIQREK--INLLKN 931
Query: 225 NEIE-ELTDVKDLRSNKKKGK*RETNK 148
N++E L V+D +S++ K RET K
Sbjct: 932 NDVEGYLRMVQDAKSDRVKQLLRETEK 958
>10_05_0090 - 9071438-9072346,9072497-9072535
Length = 315
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -2
Query: 336 NLDANVTKALQEQVKEFERAMKEAQRRDQGIVNDEGSNEIEELTDVKDLRSNKKKGK*RE 157
N+ +A E+ E + EAQ D+ +V + S K S+ KKGK +
Sbjct: 113 NIQRQYRQAKYEKYSELVSVLLEAQGEDETLVENHTSRPTGSSAAPKANASSFKKGK-NQ 171
Query: 156 TNKEKG 139
N+ KG
Sbjct: 172 NNQNKG 177
>06_03_0478 -
21259376-21259465,21259862-21259924,21260025-21260066,
21260180-21260461,21261084-21261587,21261973-21261981,
21262122-21262196,21262375-21262449,21262557-21263494,
21263577-21263607,21263694-21263979,21264691-21264905,
21265329-21265437,21265556-21265611,21265730-21265822,
21266348-21266393,21266496-21267221,21267489-21267550,
21267738-21268013,21268604-21268735,21268835-21268909
Length = 1394
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/82 (21%), Positives = 41/82 (50%)
Frame = -2
Query: 387 PNEDSSEKVKIVSVKGPNLDANVTKALQEQVKEFERAMKEAQRRDQGIVNDEGSNEIEEL 208
P+ DS + I+S P + +A+ E +++ +RR ++ E + E
Sbjct: 272 PSSDSDYRDSILSRVHPGISMVDERAVDRVGYRRELDLRDEERRRDLLLEREKERDRERE 331
Query: 207 TDVKDLRSNKKKGK*RETNKEK 142
+++DLR +++ + RE ++E+
Sbjct: 332 RELRDLRDRERERE-RERDRER 352
>04_04_1250 +
32077590-32078000,32078132-32078308,32078437-32078561,
32078629-32078761,32078866-32079015,32079105-32079158,
32079437-32079532,32080021-32080095,32080723-32080824,
32080903-32081589,32081686-32081817,32081916-32082023,
32082170-32082319
Length = 799
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = -2
Query: 405 DVEAARPNEDSSEKVKIVSVKGPNLDANV--TKALQEQVK-EFERAMKEAQRRDQGIVND 235
D A +ED ++ +I+ K AN T A +++ K + +R ++ +R+ + D
Sbjct: 257 DDSDASSSEDEAQNPQIILSKEDVYKANHKGTAATKKKKKAKLQRVIRSMKRQQRKSTED 316
Query: 234 EGSNEIEELTDVKD 193
GSN LT +KD
Sbjct: 317 TGSNYYSPLTYLKD 330
>11_01_0319 -
2396835-2396951,2397035-2397105,2397219-2397297,
2397417-2397458,2397670-2397723,2397836-2397868,
2397959-2398039,2398144-2398230,2398313-2398388,
2398633-2398808,2398912-2399034,2399249-2399361,
2399521-2399632,2400054-2400273,2401986-2402314,
2402408-2402713,2403580-2403878,2404079-2404181,
2404266-2404369,2404840-2404906,2404911-2405076,
2405241-2405956
Length = 1157
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Frame = -2
Query: 321 VTKALQEQVKEFER--------AMKEAQRRDQGIVNDEGSNEIEELTDVKDLRSNKKKGK 166
+T+ L+E +K R A E+ D G +D S+E E +D D + NK++ K
Sbjct: 638 ITETLREYLKNMPRLIMQKQKPASSESDSSDSGSGSDSYSSESESSSDESDRKRNKRRKK 697
Query: 165 *R 160
R
Sbjct: 698 CR 699
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 28.3 bits (60), Expect = 7.1
Identities = 24/73 (32%), Positives = 32/73 (43%)
Frame = -2
Query: 390 RPNEDSSEKVKIVSVKGPNLDANVTKALQEQVKEFERAMKEAQRRDQGIVNDEGSNEIEE 211
R E K K +S K + D NVTK E E E A+++ GI +G NE +
Sbjct: 183 RKRESFDVKAKQISGKRGSFDVNVTKQCDEIKGEREGFGTNAKKQCDGI---DGDNEGFD 239
Query: 210 LTDVKDLRSNKKK 172
+ NKKK
Sbjct: 240 VKARLGDEINKKK 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,415,259
Number of Sequences: 37544
Number of extensions: 93197
Number of successful extensions: 420
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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