Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_N08
(807 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z15115-1|CAA78821.1| 1031|Homo sapiens DNA topoisomerase II pro... 35 0.30
AJ011721-1|CAA09753.1| 717|Homo sapiens topoisomerase II beta p... 35 0.30
AF087160-1|AAC77432.1| 1598|Homo sapiens DNA topoisomerase II be... 35 0.30
X68060-1|CAA48197.1| 1621|Homo sapiens DNA topoisomerase II prot... 35 0.40
U54831-1|AAB01982.1| 350|Homo sapiens topoisomerase IIb protein. 35 0.40
BC021863-1|AAH21863.1| 485|Homo sapiens Unknown (protein for IM... 35 0.40
AB208879-1|BAD92116.1| 1009|Homo sapiens DNA topoisomerase II, b... 35 0.40
U80737-1|AAB91436.1| 326|Homo sapiens CAGH16 protein. 32 2.1
AF171929-1|AAF03777.1| 820|Homo sapiens metallaproteinase-disin... 31 3.7
DQ223931-1|ABB04281.1| 230|Homo sapiens protein phosphatase 1 r... 31 6.5
DQ096628-1|AAZ74794.1| 1835|Homo sapiens zipzap protein protein. 31 6.5
AY727870-1|AAU20329.2| 1113|Homo sapiens ARID2 protein. 31 6.5
AL832200-1|CAD91164.1| 1686|Homo sapiens hypothetical protein pr... 31 6.5
AF521671-1|AAN03447.1| 2165|Homo sapiens SWI/SNF chromatin remod... 31 6.5
X80031-1|CAA56335.1| 1670|Homo sapiens type IV collagen alpha 3 ... 30 8.6
BX537879-1|CAD97878.1| 1044|Homo sapiens hypothetical protein pr... 30 8.6
AJ288487-1|CAC36101.1| 1670|Homo sapiens alpha3 type IV collagen... 30 8.6
AC097662-1|AAY24251.1| 1084|Homo sapiens unknown protein. 30 8.6
>Z15115-1|CAA78821.1| 1031|Homo sapiens DNA topoisomerase II protein.
Length = 1031
Score = 35.1 bits (77), Expect = 0.30
Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Frame = -3
Query: 541 ANPASXSNFRLTQTSGNRISIPPQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPKVTM 362
A+P + + +Q GN S P +K +DD +D ++ + S +
Sbjct: 835 ASPEKSLHDKKSQDFGNLFSFPSYSQK---SEDDSAKFDSNEEDSASVFSPSFGLKQTDK 891
Query: 361 INSQEMQALK---NNQTQSQPKKSQRSTEAFPALSATAHSPAAPPQWITVSKGKDK 203
+ S+ + A K ++ T +PK++ + + A+++ + S P+ T KGK +
Sbjct: 892 VPSKTVAAKKGKPSSDTVPKPKRAPKQKKVVEAVNSDSDSEFGIPKKTTTPKGKGR 947
>AJ011721-1|CAA09753.1| 717|Homo sapiens topoisomerase II beta
protein.
Length = 717
Score = 35.1 bits (77), Expect = 0.30
Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Frame = -3
Query: 541 ANPASXSNFRLTQTSGNRISIPPQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPKVTM 362
A+P + + +Q GN S P +K +DD +D ++ + S +
Sbjct: 521 ASPEKSLHDKKSQDFGNLFSFPSYSQK---SEDDSAKFDSNEEDSASVFSPSFGLKQTDK 577
Query: 361 INSQEMQALK---NNQTQSQPKKSQRSTEAFPALSATAHSPAAPPQWITVSKGKDK 203
+ S+ + A K ++ T +PK++ + + A+++ + S P+ T KGK +
Sbjct: 578 VPSKTVAAKKGKPSSDTVPKPKRAPKQKKVVEAVNSDSDSEFGIPKKTTTPKGKGR 633
>AF087160-1|AAC77432.1| 1598|Homo sapiens DNA topoisomerase II beta
protein.
Length = 1598
Score = 35.1 bits (77), Expect = 0.30
Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Frame = -3
Query: 541 ANPASXSNFRLTQTSGNRISIPPQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPKVTM 362
A+P + + +Q GN S P +K +DD +D ++ + S +
Sbjct: 1402 ASPEKSLHDKKSQDFGNLFSFPSYSQK---SEDDSAKFDSNEEDSASVFSPSFGLKQTDK 1458
Query: 361 INSQEMQALK---NNQTQSQPKKSQRSTEAFPALSATAHSPAAPPQWITVSKGKDK 203
+ S+ + A K ++ T +PK++ + + A+++ + S P+ T KGK +
Sbjct: 1459 VPSKTVAAKKGKPSSDTVPKPKRAPKQKKVVEAVNSDSDSEFGIPKKTTTPKGKGR 1514
>X68060-1|CAA48197.1| 1621|Homo sapiens DNA topoisomerase II protein.
Length = 1621
Score = 34.7 bits (76), Expect = 0.40
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 3/116 (2%)
Frame = -3
Query: 541 ANPASXSNFRLTQTSGNRISIPPQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPKVTM 362
A P + + +Q GN S P +K +DD +D ++ + S +
Sbjct: 1425 ATPEKSLHDKKSQDFGNLFSFPSYSQK---SEDDSAKFDSNEEDSASVFSPSFGLKQTDK 1481
Query: 361 INSQEMQALK---NNQTQSQPKKSQRSTEAFPALSATAHSPAAPPQWITVSKGKDK 203
+ S+ + A K ++ T +PK++ + + A+++ + S P+ T KGK +
Sbjct: 1482 VPSKTVAAKKGKPSSDTVPKPKRAPKQKKVVEAVNSDSDSEFGIPKKTTTPKGKGR 1537
>U54831-1|AAB01982.1| 350|Homo sapiens topoisomerase IIb protein.
Length = 350
Score = 34.7 bits (76), Expect = 0.40
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 3/116 (2%)
Frame = -3
Query: 541 ANPASXSNFRLTQTSGNRISIPPQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPKVTM 362
A P + + +Q GN S P +K +DD +D ++ + S +
Sbjct: 154 ATPEKSLHDKKSQDFGNLFSFPSYSQK---SEDDSAKFDSNEEDSASVFSPSFGLKQTDK 210
Query: 361 INSQEMQALK---NNQTQSQPKKSQRSTEAFPALSATAHSPAAPPQWITVSKGKDK 203
+ S+ + A K ++ T +PK++ + + A+++ + S P+ T KGK +
Sbjct: 211 VPSKTVAAKKGKPSSDTVPKPKRAPKQKKVVEAVNSDSDSEFGIPKKTTTPKGKGR 266
>BC021863-1|AAH21863.1| 485|Homo sapiens Unknown (protein for
IMAGE:4999541) protein.
Length = 485
Score = 34.7 bits (76), Expect = 0.40
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 3/116 (2%)
Frame = -3
Query: 541 ANPASXSNFRLTQTSGNRISIPPQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPKVTM 362
A P + + +Q GN S P +K +DD +D ++ + S +
Sbjct: 289 ATPEKSLHDKKSQDFGNLFSFPSYSQK---SEDDSAKFDSNEEDSASVFSPSFGLKQTDK 345
Query: 361 INSQEMQALK---NNQTQSQPKKSQRSTEAFPALSATAHSPAAPPQWITVSKGKDK 203
+ S+ + A K ++ T +PK++ + + A+++ + S P+ T KGK +
Sbjct: 346 VPSKTVAAKKGKPSSDTVPKPKRAPKQKKVVEAVNSDSDSEFGIPKKTTTPKGKGR 401
>AB208879-1|BAD92116.1| 1009|Homo sapiens DNA topoisomerase II, beta
isozyme variant protein.
Length = 1009
Score = 34.7 bits (76), Expect = 0.40
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 3/116 (2%)
Frame = -3
Query: 541 ANPASXSNFRLTQTSGNRISIPPQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPKVTM 362
A P + + +Q GN S P +K +DD +D ++ + S +
Sbjct: 813 ATPEKSLHDKKSQDFGNLFSFPSYSQK---SEDDSAKFDSNEEDSASVFSPSFGLKQTDK 869
Query: 361 INSQEMQALK---NNQTQSQPKKSQRSTEAFPALSATAHSPAAPPQWITVSKGKDK 203
+ S+ + A K ++ T +PK++ + + A+++ + S P+ T KGK +
Sbjct: 870 VPSKTVAAKKGKPSSDTVPKPKRAPKQKKVVEAVNSDSDSEFGIPKKTTTPKGKGR 925
>U80737-1|AAB91436.1| 326|Homo sapiens CAGH16 protein.
Length = 326
Score = 32.3 bits (70), Expect = 2.1
Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 4/100 (4%)
Frame = -3
Query: 502 TSGNRISIPPQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPKVTMINSQEMQALKNNQ 323
T+G + P + + F + MG + + + +V M+ Q+ Q + Q
Sbjct: 97 TAGGAAVMRPMMQPQVSSQEGFLNAQMGAQRRRELLSHHFRQQRVAMMMQQQQQQQQQQQ 156
Query: 322 TQSQPKKSQRSTEAFPALSATAHSP----AAPPQWITVSK 215
Q Q ++ Q+ + SP APP W+ +
Sbjct: 157 QQQQQQQQQQQQQQQQQEQPQVFSPPPNVTAPPAWMAXGR 196
>AF171929-1|AAF03777.1| 820|Homo sapiens
metallaproteinase-disintegrin protein.
Length = 820
Score = 31.5 bits (68), Expect = 3.7
Identities = 21/79 (26%), Positives = 32/79 (40%)
Frame = -3
Query: 481 IPPQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPKVTMINSQEMQALKNNQTQSQPKK 302
+ P Q P + M HP + S QPP ++ SQ L +Q+Q
Sbjct: 745 VTPSQSHPRVMPSQSQPPVMPSQSHPQLTPSQSQPP---VMPSQSHPQLTPSQSQPPVTP 801
Query: 301 SQRSTEAFPALSATAHSPA 245
SQR + P+ S +P+
Sbjct: 802 SQRQPQLMPSQSQPPVTPS 820
>DQ223931-1|ABB04281.1| 230|Homo sapiens protein phosphatase 1
regulatory subunit 8 testis splice variant protein.
Length = 230
Score = 30.7 bits (66), Expect = 6.5
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = -3
Query: 406 PNIGASSVQPPKVTMINSQEMQALKNNQTQSQPKKSQRSTEAFPALSATAHSPAAPPQWI 227
P++ + V P V M N A+ N + ++PKK + + EA+P + S A W
Sbjct: 151 PDVDLTPVVPSAVNM-NPAPNPAVYNPEAVNEPKKKKYAKEAWPGCEFVSQSLIATAIWK 209
Query: 226 TVSKGK 209
+ K +
Sbjct: 210 CLLKAQ 215
>DQ096628-1|AAZ74794.1| 1835|Homo sapiens zipzap protein protein.
Length = 1835
Score = 30.7 bits (66), Expect = 6.5
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -3
Query: 406 PNIGASSVQPPKVTMINSQEMQALKNNQT-QSQ-PKKSQRSTEAFPALSATAHSPAAPPQ 233
PNI SS P V N+Q A+ ++ T QSQ P + + HSPA PPQ
Sbjct: 966 PNITPSS-SPSPVPATNNQVPTAMSSSSTPQSQGPPPTVSQMLSVKRQQQQQHSPAPPPQ 1024
Query: 232 WITV 221
+ V
Sbjct: 1025 QVQV 1028
>AY727870-1|AAU20329.2| 1113|Homo sapiens ARID2 protein.
Length = 1113
Score = 30.7 bits (66), Expect = 6.5
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -3
Query: 406 PNIGASSVQPPKVTMINSQEMQALKNNQT-QSQ-PKKSQRSTEAFPALSATAHSPAAPPQ 233
PNI SS P V N+Q A+ ++ T QSQ P + + HSPA PPQ
Sbjct: 966 PNITPSS-SPSPVPATNNQVPTAMSSSSTPQSQGPPPTVSQMLSVKRQQQQQHSPAPPPQ 1024
Query: 232 WITV 221
+ V
Sbjct: 1025 QVQV 1028
>AL832200-1|CAD91164.1| 1686|Homo sapiens hypothetical protein
protein.
Length = 1686
Score = 30.7 bits (66), Expect = 6.5
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -3
Query: 406 PNIGASSVQPPKVTMINSQEMQALKNNQT-QSQ-PKKSQRSTEAFPALSATAHSPAAPPQ 233
PNI SS P V N+Q A+ ++ T QSQ P + + HSPA PPQ
Sbjct: 817 PNITPSS-SPSPVPATNNQVPTAMSSSSTPQSQGPPPTVSQMLSVKRQQQQQHSPAPPPQ 875
Query: 232 WITV 221
+ V
Sbjct: 876 QVQV 879
>AF521671-1|AAN03447.1| 2165|Homo sapiens SWI/SNF chromatin
remodeling complex subunit OSA2 protein.
Length = 2165
Score = 30.7 bits (66), Expect = 6.5
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = -3
Query: 478 PPQQKKPTLDDDDFPSLSM---GRDDHPNIGASSVQPPKVTM 362
PP KP +DD P + GR +HP +GA Q P V +
Sbjct: 105 PPLLSKPGDEDDAPPKMGEPAGGRYEHPGLGALGTQQPPVAV 146
>X80031-1|CAA56335.1| 1670|Homo sapiens type IV collagen alpha 3
chain protein.
Length = 1670
Score = 30.3 bits (65), Expect = 8.6
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 732 PGXPPXSXGNLGXCGFPXXPXPXG 803
P PP G+LG CG P P P G
Sbjct: 669 PQGPPGIPGSLGKCGDPGLPGPDG 692
>BX537879-1|CAD97878.1| 1044|Homo sapiens hypothetical protein
protein.
Length = 1044
Score = 30.3 bits (65), Expect = 8.6
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -3
Query: 406 PNIGASSVQPPKVTMINSQEMQALKNNQT-QSQ-PKKSQRSTEAFPALSATAHSPAAPPQ 233
PNI SS P V N+Q A+ ++ T QSQ P + + HSPA PPQ
Sbjct: 175 PNITPSS-SPSPVPATNNQVPTAMPSSSTPQSQGPPPTVSQMLSVKRQQQQQHSPAPPPQ 233
Query: 232 WITV 221
+ V
Sbjct: 234 QVQV 237
>AJ288487-1|CAC36101.1| 1670|Homo sapiens alpha3 type IV collagen
protein.
Length = 1670
Score = 30.3 bits (65), Expect = 8.6
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 732 PGXPPXSXGNLGXCGFPXXPXPXG 803
P PP G+LG CG P P P G
Sbjct: 669 PQGPPGIPGSLGKCGDPGLPGPDG 692
>AC097662-1|AAY24251.1| 1084|Homo sapiens unknown protein.
Length = 1084
Score = 30.3 bits (65), Expect = 8.6
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 732 PGXPPXSXGNLGXCGFPXXPXPXG 803
P PP G+LG CG P P P G
Sbjct: 83 PQGPPGIPGSLGKCGDPGLPGPDG 106
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,615,784
Number of Sequences: 237096
Number of extensions: 1718059
Number of successful extensions: 4702
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4693
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9980595722
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -