Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_N03
         (804 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p pro...   297   1e-80
AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal pr...   297   1e-80
AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE...   297   1e-80
AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB...   297   1e-80
AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA...   297   1e-80

>BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p
           protein.
          Length = 465

 Score =  297 bits (728), Expect = 1e-80
 Identities = 137/165 (83%), Positives = 147/165 (89%)
 Frame = -2

Query: 587 HKEXTPVRHTKXLRKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKD 408
           H +  P +  K LRKVACIGAWHP RVS TVARAGQKGYHHRTE+NKKIYRIG GIH KD
Sbjct: 247 HTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKD 306

Query: 407 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT 228
           GKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HT
Sbjct: 307 GKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHT 366

Query: 227 KRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 93
           KR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 367 KRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 411



 Score = 57.6 bits (133), Expect = 2e-08
 Identities = 31/71 (43%), Positives = 39/71 (54%)
 Frame = -3

Query: 784 VKQGQXKAHIMESXLTGGTIEDKVKWAQRTXGEPIPVDFVFCPR*ND*LHWCHQGQRIQR 605
           +KQ Q KAH+ME  L GG+IEDKVKWA+    +PI V  VF            +G+  + 
Sbjct: 182 IKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKG 241

Query: 604 CHXSWHTKKXP 572
               WHTKK P
Sbjct: 242 VTSRWHTKKLP 252


>AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal
           protein L3 protein.
          Length = 416

 Score =  297 bits (728), Expect = 1e-80
 Identities = 137/165 (83%), Positives = 147/165 (89%)
 Frame = -2

Query: 587 HKEXTPVRHTKXLRKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKD 408
           H +  P +  K LRKVACIGAWHP RVS TVARAGQKGYHHRTE+NKKIYRIG GIH KD
Sbjct: 236 HTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKD 295

Query: 407 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT 228
           GKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HT
Sbjct: 296 GKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHT 355

Query: 227 KRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 93
           KR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 356 KRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 400



 Score = 57.6 bits (133), Expect = 2e-08
 Identities = 31/71 (43%), Positives = 39/71 (54%)
 Frame = -3

Query: 784 VKQGQXKAHIMESXLTGGTIEDKVKWAQRTXGEPIPVDFVFCPR*ND*LHWCHQGQRIQR 605
           +KQ Q KAH+ME  L GG+IEDKVKWA+    +PI V  VF            +G+  + 
Sbjct: 171 IKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKG 230

Query: 604 CHXSWHTKKXP 572
               WHTKK P
Sbjct: 231 VTSRWHTKKLP 241


>AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE,
           isoform E protein.
          Length = 403

 Score =  297 bits (728), Expect = 1e-80
 Identities = 137/165 (83%), Positives = 147/165 (89%)
 Frame = -2

Query: 587 HKEXTPVRHTKXLRKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKD 408
           H +  P +  K LRKVACIGAWHP RVS TVARAGQKGYHHRTE+NKKIYRIG GIH KD
Sbjct: 223 HTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKD 282

Query: 407 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT 228
           GKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HT
Sbjct: 283 GKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHT 342

Query: 227 KRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 93
           KR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 343 KRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 387



 Score = 57.6 bits (133), Expect = 2e-08
 Identities = 31/71 (43%), Positives = 39/71 (54%)
 Frame = -3

Query: 784 VKQGQXKAHIMESXLTGGTIEDKVKWAQRTXGEPIPVDFVFCPR*ND*LHWCHQGQRIQR 605
           +KQ Q KAH+ME  L GG+IEDKVKWA+    +PI V  VF            +G+  + 
Sbjct: 158 IKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKG 217

Query: 604 CHXSWHTKKXP 572
               WHTKK P
Sbjct: 218 VTSRWHTKKLP 228


>AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB,
           isoform B protein.
          Length = 403

 Score =  297 bits (728), Expect = 1e-80
 Identities = 137/165 (83%), Positives = 147/165 (89%)
 Frame = -2

Query: 587 HKEXTPVRHTKXLRKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKD 408
           H +  P +  K LRKVACIGAWHP RVS TVARAGQKGYHHRTE+NKKIYRIG GIH KD
Sbjct: 223 HTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKD 282

Query: 407 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT 228
           GKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HT
Sbjct: 283 GKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHT 342

Query: 227 KRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 93
           KR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 343 KRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 387



 Score = 57.6 bits (133), Expect = 2e-08
 Identities = 31/71 (43%), Positives = 39/71 (54%)
 Frame = -3

Query: 784 VKQGQXKAHIMESXLTGGTIEDKVKWAQRTXGEPIPVDFVFCPR*ND*LHWCHQGQRIQR 605
           +KQ Q KAH+ME  L GG+IEDKVKWA+    +PI V  VF            +G+  + 
Sbjct: 158 IKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKG 217

Query: 604 CHXSWHTKKXP 572
               WHTKK P
Sbjct: 218 VTSRWHTKKLP 228


>AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA,
           isoform A protein.
          Length = 416

 Score =  297 bits (728), Expect = 1e-80
 Identities = 137/165 (83%), Positives = 147/165 (89%)
 Frame = -2

Query: 587 HKEXTPVRHTKXLRKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKD 408
           H +  P +  K LRKVACIGAWHP RVS TVARAGQKGYHHRTE+NKKIYRIG GIH KD
Sbjct: 236 HTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKD 295

Query: 407 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT 228
           GKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HT
Sbjct: 296 GKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHT 355

Query: 227 KRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 93
           KR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 356 KRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 400



 Score = 57.6 bits (133), Expect = 2e-08
 Identities = 31/71 (43%), Positives = 39/71 (54%)
 Frame = -3

Query: 784 VKQGQXKAHIMESXLTGGTIEDKVKWAQRTXGEPIPVDFVFCPR*ND*LHWCHQGQRIQR 605
           +KQ Q KAH+ME  L GG+IEDKVKWA+    +PI V  VF            +G+  + 
Sbjct: 171 IKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKG 230

Query: 604 CHXSWHTKKXP 572
               WHTKK P
Sbjct: 231 VTSRWHTKKLP 241


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,067,392
Number of Sequences: 53049
Number of extensions: 725068
Number of successful extensions: 1945
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1940
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3757402116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)