Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_N02
(820 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 238 3e-63
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 231 5e-61
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 29 3.4
08_01_0757 - 7164380-7164490,7164585-7165041,7165057-7165275,716... 28 7.8
08_01_0332 + 2971361-2971439,2971596-2971783,2971985-2972062,297... 28 7.8
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 238 bits (583), Expect = 3e-63
Identities = 111/168 (66%), Positives = 129/168 (76%)
Frame = -1
Query: 619 KDTKGVTXXWHTKKXPRKTHKGLRKVACIGAWHPFRVSFTVARAGQKGYHHRTEMNKKIY 440
K +GV W + PRKTH+GLRKVACIGAWHP RVS+TVARAGQ GYHHRTEMNKK+Y
Sbjct: 227 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 286
Query: 439 RIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRII 260
+IG K G+ + A TE+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++
Sbjct: 287 KIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVV 340
Query: 259 TLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 116
TLR+SL T R ALE+I LKFIDTSSKFGHGRFQT +K F G LK
Sbjct: 341 TLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
Score = 53.2 bits (122), Expect = 2e-07
Identities = 34/83 (40%), Positives = 46/83 (55%)
Frame = -2
Query: 780 QKKXSHLWKSXXNGGTIXGPKVKWXREHXEKPIPVDSVXAQDEMIDCIGVTXGQRIPKVS 601
++K +HL + NGGTI KV + + EK IPVD+V +DEMID IGVT G+ V
Sbjct: 175 KQKKAHLMEIQINGGTI-ADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVV 233
Query: 600 LXVGTQRXYPVRHTRVLGKLPAL 532
G R P + R L K+ +
Sbjct: 234 TRWGVTR-LPRKTHRGLRKVACI 255
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 231 bits (565), Expect = 5e-61
Identities = 107/160 (66%), Positives = 125/160 (78%)
Frame = -1
Query: 619 KDTKGVTXXWHTKKXPRKTHKGLRKVACIGAWHPFRVSFTVARAGQKGYHHRTEMNKKIY 440
K +GV W + PRKTH+GLRKVACIGAWHP RVS+TVARAGQ GYHHRTEMNKK+Y
Sbjct: 227 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 286
Query: 439 RIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRII 260
+IG K G+ + A TE+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++
Sbjct: 287 KIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVV 340
Query: 259 TLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADK 140
TLR+SL T R ALE+I LKFIDTSSKFGHGRFQT +K
Sbjct: 341 TLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEK 380
Score = 53.2 bits (122), Expect = 2e-07
Identities = 34/83 (40%), Positives = 46/83 (55%)
Frame = -2
Query: 780 QKKXSHLWKSXXNGGTIXGPKVKWXREHXEKPIPVDSVXAQDEMIDCIGVTXGQRIPKVS 601
++K +HL + NGGTI KV + + EK IPVD+V +DEMID IGVT G+ V
Sbjct: 175 KQKKAHLMEIQINGGTI-ADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVV 233
Query: 600 LXVGTQRXYPVRHTRVLGKLPAL 532
G R P + R L K+ +
Sbjct: 234 TRWGVTR-LPRKTHRGLRKVACI 255
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 29.5 bits (63), Expect = 3.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 373 DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 278
D + + +P+GG P YG ++ D + C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402
>08_01_0757 -
7164380-7164490,7164585-7165041,7165057-7165275,
7165501-7165757
Length = 347
Score = 28.3 bits (60), Expect = 7.8
Identities = 29/106 (27%), Positives = 37/106 (34%), Gaps = 3/106 (2%)
Frame = +2
Query: 473 ITFLTSTSYSERHPKRMPSSNAGNFPKXXXXXXXXXXXXPTXSDTFGILCPWVTPMQSII 652
I FLT T E P + S +A F PT IL PW P ++
Sbjct: 47 IVFLTKTVVLETVPASIASLSA--FSPRMIADIKHYTLMPTSCCKVHILPPWPPPTEA-- 102
Query: 653 SSWANTESTGIGFSXCS---LXHFTFGPXMVPPLXLDFHKCEXFFW 781
W G FS + + H FGP + P H C+ W
Sbjct: 103 -KWFQL-FVGKQFSLVNSLNIIHVMFGPLVWDPGDGKVHLCKISIW 146
>08_01_0332 +
2971361-2971439,2971596-2971783,2971985-2972062,
2972354-2972425,2972513-2972631,2972858-2972942,
2973096-2973185,2973268-2973369,2973448-2973624,
2973874-2973954,2974511-2974582,2974662-2974756,
2974831-2974919,2975016-2975078,2975161-2975204,
2975554-2975685
Length = 521
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 2 FFFFFFALSNVYFHGLHLRL 61
FFFFFF +N+ FH L+ L
Sbjct: 307 FFFFFFFCANILFHHLNYLL 326
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,014,664
Number of Sequences: 37544
Number of extensions: 452449
Number of successful extensions: 1016
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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