Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_M24
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    27   3.2  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    27   4.2  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    26   5.5  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    26   7.3  
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    26   7.3  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   9.7  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   9.7  

>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 25/115 (21%), Positives = 48/115 (41%)
 Frame = -2

Query: 398 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRS 219
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+       +      R   
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNG 148

Query: 218 PFGSRRSMLSVFFLTRASRLRRSGYNSVRCRGSE*SVDDFRSWRGVVLGRAASCC 54
                R+   + F+     + R G   ++C  S   V D  S+  + LG  ++ C
Sbjct: 149 WVHRMRTQKGIIFI-----ILRDGTGFLQCVLSG-KVYDRASYDFINLGPESTVC 197


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 744 STHRDCESPAYRSFSIKSFSKRCQKSYH 661
           S   D E P Y + S+K FS+  +  YH
Sbjct: 149 SLEEDAELPEYLTKSLKDFSRVSENPYH 176


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 1/133 (0%)
 Frame = -2

Query: 464 SNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESG 285
           S+T+   R     H    L  ++    L S G    +S   +++   GK+   V P  + 
Sbjct: 271 SSTSAKRRRPDHNH-TSTLDASSSNTSLASTGPMTVSS---STVERKGKEASEVNPNSTS 326

Query: 284 GSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSGYNSVRC-RGSE*SV 108
                DF + +S S+    ++S  G  R            R R +G NS  C    +  V
Sbjct: 327 SVTFSDFAAAISRSRCSRCKKSKKGCDRQ-------RPCGRCRDAGLNSEDCISDDDMPV 379

Query: 107 DDFRSWRGVVLGR 69
            + R  RG   GR
Sbjct: 380 SNARKPRGRGRGR 392


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 61  DAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSR 240
           D  +PS  P    +SS+  S  RH  +   +L S     +   D   LRD +  + RVS+
Sbjct: 119 DNLIPSPLPESASRSSSQSSHQRHSRDGRGELGSEHGERRSAMDG--LRDRHIRKVRVSQ 176


>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
 Frame = -3

Query: 811 SQFXEDKTSXGPKGQSWLDPXVQYA*GLRKPGLSIL*YKEF*QEVPEKLPQG*LACGSQA 632
           S F  DK S  P+G   L+P +    G+   GL+    K   + V + + Q      +  
Sbjct: 234 SMFPIDKASGQPRGYVLLEP-MHIPLGVLTVGLN----KYSWRNVSKHILQQAATVKNAD 288

Query: 631 FIATLLFDPSMSALPII-AKQNSPSVGLFTHQK 536
            +A +L   + S++P+I  + NS   G F H K
Sbjct: 289 NLAEILLSINQSSIPLIQERSNSSKSGDFEHFK 321


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -2

Query: 470 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA--SKAEASLAESG 321
           CD+       + S G L H + R  GG  +  + +  N+  SK E  +A SG
Sbjct: 601 CDACLNLGTHSESIGDLEHQIRRYTGGISISPSAVTNNSDVSKYELGIAISG 652


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 110 VDDFRSWRGVVLGRAASCCDLLRLS 36
           VD FR W  +      SC DLL+LS
Sbjct: 72  VDGFRLWITMEYCDGGSCLDLLKLS 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,345,889
Number of Sequences: 5004
Number of extensions: 68255
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)