Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_M18
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   119   6e-28
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   116   5e-27
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    31   0.26 
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.8  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.6  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   7.4  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    25   9.8  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  119 bits (286), Expect = 6e-28
 Identities = 55/83 (66%), Positives = 66/83 (79%)
 Frame = -3

Query: 571 KASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRW 392
           +AS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLAREVLR+RG L R   W
Sbjct: 138 EASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPW 197

Query: 391 DVVVDLFFYRDPEESEKDEQQAK 323
           DV+ DL+FYRDPEE E++E+  K
Sbjct: 198 DVMPDLYFYRDPEEVEREEEAKK 220


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  116 bits (278), Expect = 5e-27
 Identities = 53/81 (65%), Positives = 65/81 (80%)
 Frame = -3

Query: 571 KASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRW 392
           +AS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLAREVLRLRG + R   W
Sbjct: 139 EASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAW 198

Query: 391 DVVVDLFFYRDPEESEKDEQQ 329
           +V+ DL+FYRDPEE E++E+Q
Sbjct: 199 EVMPDLYFYRDPEEIEREEEQ 219



 Score = 34.7 bits (76), Expect = 0.016
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = -1

Query: 771 PGDXXLFXSXPFGXXX*XKXPAXTGVTPIXGTFXTRGFLXTRSKLHSREXRXLIVLEP 598
           P D  +  S P+G     K  A TG T I G F    F    ++ + RE R +IV +P
Sbjct: 74  PADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTY-REPRLIIVTDP 130


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 574 LKASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 437
           L+A   ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 196 LEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -3

Query: 631 P*TSXXDCIGTLHKTINPLLKASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 464
           P  S     GT    +     A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 56  PDVSVISSTGTDEHGLKVQTVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 466 IGLMWWLLAREVLRLRGVLPRDQRWD 389
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -1

Query: 411 FPVTSAGML--WLICSSTVTLKKVKRM 337
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 605 WNPAQDHQPITEGFICQHSCDCFVQHRLPT 516
           WNPA D Q +   +      DCFV   + T
Sbjct: 709 WNPAADQQALARVWRDGQKKDCFVYRFIAT 738


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,710,037
Number of Sequences: 5004
Number of extensions: 49895
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)