Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_M18
(819 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 118 7e-27
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 115 5e-26
09_04_0225 - 15855544-15855727,15855796-15856406 30 1.9
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.4
06_03_0804 + 24761974-24763196,24763674-24764019 29 3.4
01_01_1003 - 7939376-7939414,7939464-7939568,7939757-7939872,794... 29 3.4
07_03_1207 - 24881074-24881906,24882204-24882285,24882921-24882926 29 5.9
06_03_0543 + 21967787-21970261 29 5.9
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.8
08_01_0404 - 3590296-3590409,3590529-3590819,3592414-3592461,359... 28 7.8
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 118 bits (283), Expect = 7e-27
Identities = 57/117 (48%), Positives = 82/117 (70%), Gaps = 1/117 (0%)
Frame = -3
Query: 664 GVFXNQIQAAFP*TSXXDCIGTLHKTIN-PLLKASYVNIPVIALCNTDSPLRFVDIAIPC 488
G F NQ+Q +F + I T +T + P+ +++ NIP IA C+TDSP+R+VDI IP
Sbjct: 110 GTFTNQLQTSF--SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPA 167
Query: 487 NTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQ 317
N K +SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E++A Q
Sbjct: 168 NNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 115 bits (276), Expect = 5e-26
Identities = 55/113 (48%), Positives = 79/113 (69%), Gaps = 1/113 (0%)
Frame = -3
Query: 664 GVFXNQIQAAFP*TSXXDCIGTLHKTIN-PLLKASYVNIPVIALCNTDSPLRFVDIAIPC 488
G F NQ+Q +F + I T +T + P+ +++ NIP IA C+TDSP+R+VDI IP
Sbjct: 110 GTFTNQLQTSF--SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPA 167
Query: 487 NTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 329
N K SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E++
Sbjct: 168 NNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
>09_04_0225 - 15855544-15855727,15855796-15856406
Length = 264
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = -2
Query: 230 GYRPACCTRCSSC-FWSTPC--SRRMVCPGTR 144
G P+ TRC SC W+T C + R CP TR
Sbjct: 171 GATPSATTRCRSCTAWATSCPGTSRAGCPPTR 202
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 209 TRCSSCFWSTPCSRRMVCPGTR*VEHN 129
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
>06_03_0804 + 24761974-24763196,24763674-24764019
Length = 522
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +3
Query: 492 GIAMSTNLSGESVLHKAITGMLTYEAFSNGLMVLCRVPIQSXXXVHGNAAWIWLXKTPW 668
G+ MS N+ G + HK ++ Y + N + V+ V + + N IW KTPW
Sbjct: 441 GVHMSENVIGNTT-HKT-EHLIRYYHYHNTINVIGEV-CREFVPIPPNGGLIWSEKTPW 496
>01_01_1003 -
7939376-7939414,7939464-7939568,7939757-7939872,
7941494-7942760
Length = 508
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 208 VQQAGRYPQPMKPLAPVFHSSLHGQ 282
V+++ RYP P +PLAP+ S HG+
Sbjct: 223 VEKSVRYPLPPRPLAPICVFSHHGR 247
>07_03_1207 - 24881074-24881906,24882204-24882285,24882921-24882926
Length = 306
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 166 LLEQGVLQKQELQRVQQAGRYPQPMKPLAP 255
LLE+ + KQ+ Q+ QQAG P +P+AP
Sbjct: 178 LLEKLKIAKQQQQQQQQAGPEPPRGEPIAP 207
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 460 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 371
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 209 TRCSSCFWSTPCSRRMVCPGTR*VEHN 129
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>08_01_0404 -
3590296-3590409,3590529-3590819,3592414-3592461,
3592559-3592795,3593668-3593704,3594311-3594627
Length = 347
Score = 28.3 bits (60), Expect = 7.8
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 465 IEWEDLVLHG--IAMSTNLSGESVLHKAITGMLTYEAFSNGLMVLCRVPIQSXXXVHGNA 638
I EDL+L+G + L S L + + G++ + A +GL V+C V ++ N
Sbjct: 141 ISQEDLILYGQSVGSGPTLHLASRLPR-LRGVVLHSAILSGLRVVCHVNFTFCFDIYKNV 199
Query: 639 AWIWLXKTP 665
I K+P
Sbjct: 200 KKIKKVKSP 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,499,866
Number of Sequences: 37544
Number of extensions: 356918
Number of successful extensions: 940
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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